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Estimate of the sequenced proportion of the global prokaryotic genome JOURNAL ARTICLE published December 2020 in Microbiome Research funded by National Natural Science Foundation of China (31670076) | Special Investigation on Scientific and Technological Basic Resources (2017FY100300) | National Key Research and Development Program (2018YFA0900400 and 2018YFA0901704) | Key Technology Research and Development Program of Shandong (2018GSF121015) | Natural Science Foundation of Jiangsu Province (BK20190199) | China Postdoctoral Science Foundation (2018M642649 and 2019T120586) | Special Funding for Postdoctoral Innovation Project of Shandong Province (201902014) |
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Commensal-derived metabolites govern Vibrio cholerae pathogenesis in host intestine JOURNAL ARTICLE published December 2019 in Microbiome Research funded by National Research Foundation (2017R1A2A2A05019987) | Ministry of Agriculture, Food and Rural Affairs (918003041SB010) |
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Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere JOURNAL ARTICLE published 29 September 2023 in Microbiome |
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Comparative metagenomic analyses reveal viral-induced shifts of host metabolism towards nucleotide biosynthesis JOURNAL ARTICLE published December 2014 in Microbiome |
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Gut microbiome variation modulates the effects of dietary fiber on host metabolism JOURNAL ARTICLE published December 2021 in Microbiome Research funded by National Institute of Diabetes and Digestive and Kidney Diseases (DK108259) | Foundation for the National Institutes of Health (GM140464) | Food and Nutrition Service (2018-08000) | Agencia Nacional de Promoción Científica y Tecnológica (PICT-2017-4497) |
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Competitive lottery-based assembly of selected clades in the human gut microbiome JOURNAL ARTICLE published December 2018 in Microbiome Research funded by National Institutes of Health (DP2AT00780201) | Natural Sciences and Engineering Research Council of Canada (PGS) | National Institute of General Medical Sciences (1R01GM124312-01) |
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Coexistence patterns of soil methanogens are closely tied to methane generation and community assembly in rice paddies JOURNAL ARTICLE published December 2021 in Microbiome Research funded by Strategic Priority Research Program of the Chinese Academy of Sciences (XDA24020104) | National Natural Science of Foundation of China (41530856,41430856) | Youth Innovation Promotion Association of the Chinese Academy of Sciences (2016284) | Top-Notch Young Talents Program of China (W03070089) | Scholar Program of the Jiangsu Province (BRA2019333) |
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Maternal microbiota communicates with the fetus through microbiota-derived extracellular vesicles JOURNAL ARTICLE published 13 November 2023 in Microbiome Research funded by Suomen Kulttuurirahasto (00220426) | Yrjö Jahnssonin Säätiö (20217413) | National Institutes of Health (R01AB123456) | Academy of Finland (328768) |
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Spatial heterogeneity of bacterial colonization across different gut segments following inter-species microbiota transplantation JOURNAL ARTICLE published December 2020 in Microbiome Research funded by National Natural Science Foundation of China (31630074,31972596) | Beijing Municipal Natural Science Foundation (S170001) | 111 Project (B16044) |
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Transplanted human fecal microbiota enhanced Guillain Barré syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice JOURNAL ARTICLE published December 2017 in Microbiome Research funded by National Institute of Allergy and Infectious Diseases (U19AI090872,N01-AI-30058) | National Institute of Environmental Health Sciences (T35RR017491) |
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Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem JOURNAL ARTICLE published December 2020 in Microbiome Research funded by Innovationfonden (12-132654) |
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PandaGUT provides new insights into bacterial diversity, function, and resistome landscapes with implications for conservation JOURNAL ARTICLE published 7 October 2023 in Microbiome Research funded by National Natural Science Foundation of China (31970386,32025009,31821001) | Youth Innovation Promotion Association of the Chinese Academy of Sciences (2023090) | Strategic Priority Research Program of the Chinese Academy of Sciences (XDB31000000) |
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Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes JOURNAL ARTICLE published 8 March 2023 in Microbiome Research funded by Vetenskapsrådet (2019-03482,2019-00299,2019-03482) | Knut och Alice Wallenbergs Stiftelse (KAW 2020.0239) |
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Linking gastrointestinal microbiota and metabolome dynamics to clinical outcomes in paediatric haematopoietic stem cell transplantation JOURNAL ARTICLE published December 2022 in Microbiome Research funded by NIHR Great Ormond Street Hospital Biomedical Research Centre (16IR18,ICA-CL 2015-01-002) | Medical Research Council (M008665) | Great Ormond Street Hospital Charity (V6017) |
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Deciphering functional diversification within the lichen microbiota by meta-omics JOURNAL ARTICLE published December 2017 in Microbiome Research funded by Austrian Science Fund (I882) | German Science Foundation (I882) |
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The multi-kingdom microbiome of the goat gastrointestinal tract JOURNAL ARTICLE published 2 October 2023 in Microbiome Research funded by Open Foundation of Guangdong Provincial Key Laboratory of Animal Molecular Design and Precise Breeding (2019B030301010, 2019KSYS011) | National Natural Science Fund (U20A2051) | Major Science and Technology Projects in Guangxi (AA18118041) |
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Biogeography, succession, and origin of the chicken intestinal mycobiome JOURNAL ARTICLE published December 2022 in Microbiome |
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Collection of non-meconium stool on fecal occult blood cards is an effective method for fecal microbiota studies in infants JOURNAL ARTICLE published December 2017 in Microbiome |
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Conserved phylogenetic distribution and limited antibiotic resistance of class 1 integrons revealed by assessing the bacterial genome and plasmid collection JOURNAL ARTICLE published December 2018 in Microbiome |
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Supercarriers of antibiotic resistome in a world’s large river JOURNAL ARTICLE published December 2022 in Microbiome Research funded by China Postdoctoral Science Foundation (2020M680243) | National Natural Science Foundation of China (51721006 and U2240205) |