A multi-omic assessment of the mechanisms of intestinal microbes used to treat diarrhea in early-weaned lambs

JOURNAL ARTICLE published 20 February 2024 in mSystems

Research funded by MOST | National Key Research and Development Program of China (2022YFD1300201) | MOST | National Key Research and Development Program of China (2021YFD1600704) | MOA | Earmarked Fund for China Agriculture Research System (CARS-39-12)

Authors: Hongran Guo | Jiuzeng Cui | Qian Li | Xuhui Liang | Junda Li | Bohua Yang | Peter Kalds | Yulin Chen | Yuxin Yang

Editors: John F. Rawls

Extracellular Vesicles in Teasing Apart Complex Plant-Microbiota Links: Implications for Microbiome-Based Biotechnology

JOURNAL ARTICLE published 31 August 2021 in mSystems

Research funded by National Research Foundation (129580)

Authors: Thabiso E. Motaung | Emma T. Steenkamp

What Lies Beneath? Taking the Plunge into the Murky Waters of Phage Biology

JOURNAL ARTICLE published 23 February 2023 in mSystems

Research funded by HHS | NIH | National Institute on Aging (T32 AG00096-38) | UC | Office of the President, University of California (R01RG3732)

Authors: Mirjam Zünd | Sage J. B. Dunham | Jason A. Rothman | Katrine L. Whiteson

Editors: Jack A. Gilbert

Pathophysiology of SARS-CoV-2 Infection in the Upper Respiratory Tract and Its Relation to Breath Volatile Organic Compounds

JOURNAL ARTICLE published 31 August 2021 in mSystems

Authors: Moria Lichtenstein | Sondra Turjerman | Jayant M. Pinto | Orna Barash | Omry Koren

Editors: Jotham Suez

Bacteria-Oil Microaggregates Are an Important Mechanism for Hydrocarbon Degradation in the Marine Water Column

JOURNAL ARTICLE published 26 October 2021 in mSystems

Research funded by Gulf of Mexico Research Initiative (ADDOMEx) | Gulf of Mexico Research Initiative (ADDOMEx) | National Science Foundation (OCE-1455851) | National Science Foundation (OCE-1849932)

Authors: Amanda M. Achberger | Shawn M. Doyle | Makeda I. Mills | Charles P. Holmes | Antonietta Quigg | Jason B. Sylvan

Editors: Zarath M. Summers

Absolute Measurements of mRNA Translation in Caulobacter crescentus Reveal Important Fitness Costs of Vitamin B ₁₂ Scavenging

JOURNAL ARTICLE published 27 August 2019 in mSystems

Research funded by HHS | National Institutes of Health (GM124733)

Authors: James R. Aretakis | Alisa Gega | Jared M. Schrader

Editors: Mani Arumugam

Deciphering the antigen specificities of antibodies by clustering their complementarity determining region sequences

JOURNAL ARTICLE published 21 December 2023 in mSystems

Research funded by Japan Agency for Medical Research and Development (JP21am0101108) | BIKEN Foundation (Taniguchi Scholarship)

Authors: Dianita S. Saputri | Hendra S. Ismanto | Dendi K. Nugraha | Zichang Xu | Yasuhiko Horiguchi | Shuhei Sakakibara | Daron M. Standley

Editors: Ileana M. Cristea

Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods

JOURNAL ARTICLE published 19 March 2024 in mSystems

Research funded by National Science Foundation (DGE1256260, 2055455, DGE134012) | DOC | National Oceanic and Atmospheric Administration (NA17OAR4320152) | College of Engineering, University of Michigan (Blue Sky Initiative)

Authors: Bridget Hegarty | James Riddell V | Eric Bastien | Kathryn Langenfeld | Morgan Lindback | Jaspreet S. Saini | Anthony Wing | Jessica Zhang | Melissa Duhaime

Editors: Ileana M. Cristea

A Genome-Scale Model of Shewanella piezotolerans Simulates Mechanisms of Metabolic Diversity and Energy Conservation

JOURNAL ARTICLE published 21 April 2017 in mSystems

Research funded by National Natural Science Foundation of China (31290232) | National Science Foundation (EPS-1004057) | National Science Foundation (1553211) | U.S. Department of Agriculture (RI0015-H002)

Authors: Keith Dufault-Thompson | Huahua Jian | Ruixue Cheng | Jiefu Li | Fengping Wang | Ying Zhang

Editors: Paul Wilmes

Integrated Omic Analyses Provide Evidence that a “ Candidatus Accumulibacter phosphatis” Strain Performs Denitrification under Microaerobic Conditions

JOURNAL ARTICLE published 26 February 2019 in mSystems

Research funded by National Science Foundation (CBET-1435661) | National Science Foundation (CBET-1803055) | National Science Foundation (MCB-1518130) | U.S. Department of Energy (DE-AC02-05CH11231)

Authors: Pamela Y. Camejo | Ben O. Oyserman | Katherine D. McMahon | Daniel R. Noguera

Editors: Rachel J. Dutton

A photoheterotrophic bacterium from Iceland has adapted its photosynthetic machinery to the long days of polar summer

JOURNAL ARTICLE published 19 March 2024 in mSystems

Research funded by Ministerstvo Školství, Mládeže a Tělovýchovy (LM2018129) | Ministerstvo Školství, Mládeže a Tělovýchovy (CZ.02.1.01/0.0/0.0/15_003/0000441) | Grantová Agentura České Republiky (GX19-28778X) | Ministerstvo Školství, Mládeže a Tělovýchovy (LM2023050) | Ministerstvo Školství, Mládeže a Tělovýchovy (CZ.02.1.01/0.0/0.0/18_046/0016045)

Authors: Jürgen Tomasch | Karel Kopejtka | Tomáš Bílý | Alastair T. Gardiner | Zdenko Gardian | Sahana Shivaramu | Michal Koblížek | David Kaftan

Editors: Angela Re

Untangling Species-Level Composition of Complex Bacterial Communities through a Novel Metagenomic Approach

JOURNAL ARTICLE published 25 August 2020 in mSystems

Research funded by Science Foundation Ireland (15/JP-HDHL/3280)

Authors: Christian Milani | Giulia Alessandri | Marta Mangifesta | Leonardo Mancabelli | Gabriele Andrea Lugli | Federico Fontana | Giulia Longhi | Rosaria Anzalone | Alice Viappiani | Sabrina Duranti | Francesca Turroni | Renato Costi | Alfredo Annicchiarico | Andrea Morini | Leopoldo Sarli | Maria Cristina Ossiprandi | Douwe van Sinderen | Marco Ventura

Editors: J. Gregory Caporaso

Deciphering a Marine Bone-Degrading Microbiome Reveals a Complex Community Effort

JOURNAL ARTICLE published 23 February 2021 in mSystems

Research funded by ERA-NET Marine Biotechnology - ProBone (604814) | Ministerio de Economía y Competitividad (BIO2017-85522-R) | Ministerio de Economía y Competitividad (PCIN-2017-078) | Norwegian Biodiversity Information Centre (PA 809116 knr. 47-14)

Authors: Erik Borchert | Antonio García-Moyano | Sergio Sanchez-Carrillo | Thomas G. Dahlgren | Beate M. Slaby | Gro Elin Kjæreng Bjerga | Manuel Ferrer | Sören Franzenburg | Ute Hentschel

Editors: Simon Lax

Longitudinal Comparison of Bacterial Diversity and Antibiotic Resistance Genes in New York City Sewage

JOURNAL ARTICLE published 27 August 2019 in mSystems

Authors: Susan M. Joseph | Thomas Battaglia | Julia M. Maritz | Jane M. Carlton | Martin J. Blaser

Editors: Zackery Bulman

Seasonality and longer-term development generate temporal dynamics in the Populus microbiome

JOURNAL ARTICLE published 19 March 2024 in mSystems

Research funded by U.S. Department of Energy (Plant-microbe interfaces)

Authors: William A. Argiroff | Alyssa A. Carrell | Dawn M. Klingeman | Nicholas C. Dove | Wellington Muchero | Allison M. Veach | Toni Wahl | Steven J. Lebreux | Amber B. Webb | Kellie Peyton | Christopher W. Schadt | Melissa A. Cregger

Editors: Davide Bulgarelli

Omics-Inferred Partitioning and Expression of Diverse Biogeochemical Functions in a Low-O ₂ Cyanobacterial Mat Community

JOURNAL ARTICLE published 21 December 2021 in mSystems

Research funded by National Science Foundation (EAR1035955) | National Science Foundation (EAR 1637066) | National Science Foundation (EAR1035957)

Authors: Sharon L. Grim | Alexander A. Voorhies | Bopaiah A. Biddanda | Sunit Jain | Stephen C. Nold | Russ Green | Gregory J. Dick

Editors: Hans C. Bernstein

Multiplatform Physiologic and Metabolic Phenotyping Reveals Microbial Toxicity

JOURNAL ARTICLE published 30 October 2018 in mSystems

Research funded by HHS | National Institutes of Health (ES022186) | HHS | National Institutes of Health (ES028288) | HHS | National Institutes of Health (ES026684) | HHS | National Institutes of Health (LM12415) | U.S. Department of Agriculture (2914-38420-21822) | Pennsylvania Department of Health (Tobacco CURE)

Authors: Jingwei Cai | Robert G. Nichols | Imhoi Koo | Zachary A. Kalikow | Limin Zhang | Yuan Tian | Jingtao Zhang | Philip B. Smith | Andrew D. Patterson

Editors: Pieter C. Dorrestein

More Than Just a Spearhead: Diverse Functions of PAAR for Assembly and Delivery of Toxins of the Contractile Injection Systems

JOURNAL ARTICLE published 21 December 2021 in mSystems

Research funded by MOST | National Key Research and Development Program of China (2020YFA0907200) | National Natural Science Foundation of China (31770082) | National Natural Science Foundation of China (32030001)

Authors: Hao-Yu Zheng | Liang Yang | Tao Dong

The intestinal microbiota predicts COVID-19 severity and fatality regardless of hospital feeding method

JOURNAL ARTICLE published 7 August 2023 in mSystems

Research funded by NIH NCI (U01 CA261276)

Authors: Vanni Bucci | Doyle V. Ward | Shakti Bhattarai | Mayra Rojas-Correa | Ayan Purkayastha | Devon Holler | Ming Da Qu | William G. Mitchell | Jason Yang | Samuel Fountain | Abigail Zeamer | Catherine S. Forconi | Gavin Fujimori | Boaz Odwar | Caitlin Cawley | Ann M. Moormann | Mireya Wessolossky | Ana Maldonado-Contreras

Editors: Kim E. Barrett

Metabolic Network Models of the Gardnerella Pangenome Identify Key Interactions with the Vaginal Environment

JOURNAL ARTICLE published 23 February 2023 in mSystems

Research funded by HHS | NIH | National Center for Complementary and Integrative Health (R01AI154242) | HHS | NIH | National Institute of General Medical Sciences (5T32GM136615-03) | National Science Foundation (1842490)

Authors: Lillian R. Dillard | Emma M. Glass | Amanda L. Lewis | Krystal Thomas-White | Jason A. Papin

Editors: Vanni Bucci