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Prediction of Drosophila melanogaster gene function using Support Vector Machines

JOURNAL ARTICLE published December 2013 in BioData Mining

Authors: Nicholas Mitsakakis | Zak Razak | Michael Escobar | J Timothy Westwood

https://doi.org/10.1186/1756-0381-6-8 Actions

Reference-free phylogeny from sequencing data

JOURNAL ARTICLE published 27 March 2023 in BioData Mining

Research funded by Ministerstvo Školství, Mládeže a Tělovýchovy (CZ.02.1.01/0.0/0.0/16_019/0000765,CZ.02.1.01/0.0/0.0/16_019/0000765)

Authors: Petr Ryšavý | Filip Železný

https://doi.org/10.1186/s13040-023-00329-x Actions

‘MicroRNA Targets’, a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana

JOURNAL ARTICLE published December 2012 in BioData Mining

Authors: Lorenz Bülow | Julio C Bolívar | Jonas Ruhe | Yuri Brill | Reinhard Hehl

https://doi.org/10.1186/1756-0381-5-7 Actions

A new pipeline for structural characterization and classification of RNA-Seq microbiome data

JOURNAL ARTICLE published December 2021 in BioData Mining

Research funded by COLCIENCIAS (Grant No. 1215-5693-4635, Contract 0770-2013) | COLCIENCIAS and Gobernación del Atlántico (Grant No. 673 (2014)) | National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA (Award No. R01AI110385) | Universidad del Norte (Grant FOFICO 32101 PE0031)

Authors: Sebastian Racedo | Ivan Portnoy | Jorge I. Vélez | Homero San-Juan-Vergara | Marco Sanjuan | Eduardo Zurek

https://doi.org/10.1186/s13040-021-00266-7 Actions

Testing multiple hypotheses through IMP weighted FDR based on a genetic functional network with application to a new zebrafish transcriptome study

JOURNAL ARTICLE published June 2015 in BioData Mining

Authors: Jiang Gui | Casey S. Greene | Con Sullivan | Walter Taylor | Jason H. Moore | Carol Kim

https://doi.org/10.1186/s13040-015-0050-8 Actions

A maximum flow-based network approach for identification of stable noncoding biomarkers associated with the multigenic neurological condition, autism

JOURNAL ARTICLE published December 2021 in BioData Mining

Authors: Maya Varma | Kelley M. Paskov | Brianna S. Chrisman | Min Woo Sun | Jae-Yoon Jung | Nate T. Stockham | Peter Y. Washington | Dennis P. Wall

https://doi.org/10.1186/s13040-021-00262-x Actions

iU-Net: a hybrid structured network with a novel feature fusion approach for medical image segmentation

JOURNAL ARTICLE published 21 February 2023 in BioData Mining

Research funded by National Natural Science Foundation of China (No.61962054,No.61962054,No.61962054,No.61962054,No.61962054,No.61962054) | The Cultivation plan of major Scientific Research Projects of Northwest Normal University (No.NWNU-LKZD2021-06,No.NWNU-LKZD2021-06,No.NWNU-LKZD2021-06,No.NWNU-LKZD2021-06,No.NWNU-LKZD2021-06,No.NWNU-LKZD2021-06)

Authors: Yun Jiang | Jinkun Dong | Tongtong Cheng | Yuan Zhang | Xin Lin | Jing Liang

https://doi.org/10.1186/s13040-023-00320-6 Actions

Rule based classifier for the analysis of gene-gene and gene-environment interactions in genetic association studies

JOURNAL ARTICLE published December 2011 in BioData Mining

Authors: Thorsten Lehr | Jing Yuan | Dirk Zeumer | Supriya Jayadev | Marylyn D Ritchie

https://doi.org/10.1186/1756-0381-4-4 Actions

Uncovering mechanisms of transcriptional regulations by systematic mining of cis regulatory elements with gene expression profiles

JOURNAL ARTICLE published December 2008 in BioData Mining

Authors: Qicheng Ma | Gung-Wei Chirn | Joseph D Szustakowski | Adel Bakhtiarova | Penelope A Kosinski | Daniel Kemp | Nanguneri Nirmala

https://doi.org/10.1186/1756-0381-1-4 Actions

Robust normalization protocols for multiplexed fluorescence bioimage analysis

JOURNAL ARTICLE published December 2016 in BioData Mining

Research funded by Biotechnology and Biological Sciences Research Council (GB) (BB/K018868/1) | Qatar National Research Fund (NPRP 5 - 1345 - 1 - 228)

Authors: Shan E Ahmed Raza | Daniel Langenkämper | Korsuk Sirinukunwattana | David Epstein | Tim W. Nattkemper | Nasir M. Rajpoot

https://doi.org/10.1186/s13040-016-0088-2 Actions

Taxon ordering in phylogenetic trees by means of evolutionary algorithms

JOURNAL ARTICLE published December 2011 in BioData Mining

Authors: Francesco Cerutti | Luigi Bertolotti | Tony L Goldberg | Mario Giacobini

https://doi.org/10.1186/1756-0381-4-20 Actions

Transcriptome bioinformatic analysis identifies potential therapeutic mechanism of pentylenetetrazole in down syndrome

JOURNAL ARTICLE published December 2010 in BioData Mining

Authors: Abhay Sharma

https://doi.org/10.1186/1756-0381-3-7 Actions

Discrete derivative: a data slicing algorithm for exploration of sharing biological networks between rheumatoid arthritis and coronary heart disease

JOURNAL ARTICLE published December 2011 in BioData Mining

Authors: Guang Zheng | Miao Jiang | Xiaojuan He | Jing Zhao | Hongtao Guo | Gao Chen | Qinglin Zha | Aiping Lu

https://doi.org/10.1186/1756-0381-4-18 Actions

Evolutionary triangulation: informing genetic association studies with evolutionary evidence

JOURNAL ARTICLE published December 2016 in BioData Mining

Authors: Minjun Huang | Britney E. Graham | Ge Zhang | Reed Harder | Nuri Kodaman | Jason H. Moore | Louis Muglia | Scott M. Williams

https://doi.org/10.1186/s13040-016-0091-7 Actions

Functional dyadicity and heterophilicity of gene-gene interactions in statistical epistasis networks

JOURNAL ARTICLE published June 2015 in BioData Mining

Authors: Ting Hu | Angeline S. Andrew | Margaret R. Karagas | Jason H. Moore

https://doi.org/10.1186/s13040-015-0062-4 Actions

LAF: Logic Alignment Free and its application to bacterial genomes classification

JOURNAL ARTICLE published June 2015 in BioData Mining

Authors: Emanuel Weitschek | Fabio Cunial | Giovanni Felici

https://doi.org/10.1186/s13040-015-0073-1 Actions

Connecting genetics and gene expression data for target prioritisation and drug repositioning

JOURNAL ARTICLE published December 2018 in BioData Mining

Authors: Enrico Ferrero | Pankaj Agarwal

https://doi.org/10.1186/s13040-018-0171-y Actions

A new challenge for data analytics: transposons

JOURNAL ARTICLE published December 2022 in BioData Mining

Authors: Ralf E. Wellinger | Jesús S. Aguilar–Ruiz

https://doi.org/10.1186/s13040-022-00294-x Actions

Application of a spatially-weighted Relief algorithm for ranking genetic predictors of disease

JOURNAL ARTICLE published December 2012 in BioData Mining

Authors: Matthew E Stokes | Shyam Visweswaran

https://doi.org/10.1186/1756-0381-5-20 Actions

An efficient computational method for predicting drug-target interactions using weighted extreme learning machine and speed up robot features

JOURNAL ARTICLE published December 2021 in BioData Mining

Research funded by Fundamental Research Funds for the Central Universities (2019XKQYMS88)

Authors: Ji-Yong An | Fan-Rong Meng | Zi-Ji Yan

https://doi.org/10.1186/s13040-021-00242-1 Actions
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