Robust normalization protocols for multiplexed fluorescence bioimage analysis

JOURNAL ARTICLE published December 2016 in BioData Mining

Research funded by Biotechnology and Biological Sciences Research Council (GB) (BB/K018868/1) | Qatar National Research Fund (NPRP 5 - 1345 - 1 - 228)

Authors: Shan E Ahmed Raza | Daniel Langenkämper | Korsuk Sirinukunwattana | David Epstein | Tim W. Nattkemper | Nasir M. Rajpoot

Uncovering mechanisms of transcriptional regulations by systematic mining of cis regulatory elements with gene expression profiles

JOURNAL ARTICLE published December 2008 in BioData Mining

Authors: Qicheng Ma | Gung-Wei Chirn | Joseph D Szustakowski | Adel Bakhtiarova | Penelope A Kosinski | Daniel Kemp | Nanguneri Nirmala

A maximum flow-based network approach for identification of stable noncoding biomarkers associated with the multigenic neurological condition, autism

JOURNAL ARTICLE published December 2021 in BioData Mining

Authors: Maya Varma | Kelley M. Paskov | Brianna S. Chrisman | Min Woo Sun | Jae-Yoon Jung | Nate T. Stockham | Peter Y. Washington | Dennis P. Wall

‘MicroRNA Targets’, a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana

JOURNAL ARTICLE published December 2012 in BioData Mining

Authors: Lorenz Bülow | Julio C Bolívar | Jonas Ruhe | Yuri Brill | Reinhard Hehl

Confounding of linkage disequilibrium patterns in large scale DNA based gene-gene interaction studies

JOURNAL ARTICLE published December 2019 in BioData Mining

Research funded by Service Public de Wallonie (WELBIO-CR-2015S-03(R))

Authors: Marc Joiret | Jestinah M. Mahachie John | Elena S. Gusareva | Kristel Van Steen

Extraction of pure components from overlapped signals in gas chromatography-mass spectrometry (GC-MS)

JOURNAL ARTICLE published December 2009 in BioData Mining

Authors: Vladimir A Likić

Study of Meta-analysis strategies for network inference using information-theoretic approaches

JOURNAL ARTICLE published December 2017 in BioData Mining

Authors: Ngoc C. Pham | Benjamin Haibe-Kains | Pau Bellot | Gianluca Bontempi | Patrick E. Meyer

Prediction of Drosophila melanogaster gene function using Support Vector Machines

JOURNAL ARTICLE published December 2013 in BioData Mining

Authors: Nicholas Mitsakakis | Zak Razak | Michael Escobar | J Timothy Westwood

Disclosing transcriptomics network-based signatures of glioma heterogeneity using sparse methods

JOURNAL ARTICLE published 26 September 2023 in BioData Mining

Research funded by Fundação para a Ciência e a Tecnologia (CEECINST/00102/2018)

Authors: Sofia Martins | Roberta Coletti | Marta B. Lopes

gammaMAXT: a fast multiple-testing correction algorithm

JOURNAL ARTICLE published June 2015 in BioData Mining

Authors: François Van Lishout | Francesco Gadaleta | Jason H. Moore | Louis Wehenkel | Kristel Van Steen

LAF: Logic Alignment Free and its application to bacterial genomes classification

JOURNAL ARTICLE published June 2015 in BioData Mining

Authors: Emanuel Weitschek | Fabio Cunial | Giovanni Felici

Connecting genetics and gene expression data for target prioritisation and drug repositioning

JOURNAL ARTICLE published December 2018 in BioData Mining

Authors: Enrico Ferrero | Pankaj Agarwal

Testing multiple hypotheses through IMP weighted FDR based on a genetic functional network with application to a new zebrafish transcriptome study

JOURNAL ARTICLE published June 2015 in BioData Mining

Authors: Jiang Gui | Casey S. Greene | Con Sullivan | Walter Taylor | Jason H. Moore | Carol Kim

Fast approximate hierarchical clustering using similarity heuristics

JOURNAL ARTICLE published December 2008 in BioData Mining

Authors: Meelis Kull | Jaak Vilo

Machine learning based study for the classification of Type 2 diabetes mellitus subtypes

JOURNAL ARTICLE published 22 August 2023 in BioData Mining

Research funded by Consejo Nacional de Ciencia y Tecnología (Project FORDECYT-PRONACES No: 41756,Project FORDECYT-PRONACES No: 41756) | Consejo Nacional de Ciencia y Tecnología (Project FORDECYT-PRONACES No: 41756,Project FORDECYT-PRONACES No: 41756,Project FORDECYT-PRONACES No: 41756)

Authors: Nelson E. Ordoñez-Guillen | Jose Luis Gonzalez-Compean | Ivan Lopez-Arevalo | Miguel Contreras-Murillo | Edwin Aldana-Bobadilla

Prescription pattern analysis of Type 2 Diabetes Mellitus: a cross-sectional study in Isfahan, Iran

JOURNAL ARTICLE published 20 October 2023 in BioData Mining

Authors: Elnaz Ziad | Somayeh Sadat | Farshad Farzadfar | Mohammad-Reza Malekpour

ISLAND: in-silico proteins binding affinity prediction using sequence information

JOURNAL ARTICLE published December 2020 in BioData Mining

Research funded by University of Warwick (Open Access Publishing Support) | Higher Education Commission, Pakistan (213-58990-2PS2-046) | Higher Education Commision, Pakistan (NRPU 6085)

Authors: Wajid Arshad Abbasi | Adiba Yaseen | Fahad Ul Hassan | Saiqa Andleeb | Fayyaz Ul Amir Afsar Minhas

An unsupervised image segmentation algorithm for coronary angiography

JOURNAL ARTICLE published 21 October 2022 in BioData Mining

Authors: Zong-Xian Yin | Hong-Ming Xu

Reference-free phylogeny from sequencing data

JOURNAL ARTICLE published 27 March 2023 in BioData Mining

Research funded by Ministerstvo Školství, Mládeže a Tělovýchovy (CZ.02.1.01/0.0/0.0/16_019/0000765,CZ.02.1.01/0.0/0.0/16_019/0000765)

Authors: Petr Ryšavý | Filip Železný

A new pipeline for structural characterization and classification of RNA-Seq microbiome data

JOURNAL ARTICLE published December 2021 in BioData Mining

Research funded by COLCIENCIAS (Grant No. 1215-5693-4635, Contract 0770-2013) | COLCIENCIAS and Gobernación del Atlántico (Grant No. 673 (2014)) | National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA (Award No. R01AI110385) | Universidad del Norte (Grant FOFICO 32101 PE0031)

Authors: Sebastian Racedo | Ivan Portnoy | Jorge I. Vélez | Homero San-Juan-Vergara | Marco Sanjuan | Eduardo Zurek