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Erratum to: Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires

JOURNAL ARTICLE published December 2016 in Microbiome

Authors: Eugen Bauer | Cedric Christian Laczny | Stefania Magnusdottir | Paul Wilmes | Ines Thiele

Microbiota analysis optimization for human bronchoalveolar lavage fluid

JOURNAL ARTICLE published December 2019 in Microbiome

Research funded by CIHR (PJT149057)

Authors: Pierre H. H. Schneeberger | Janice Prescod | Liran Levy | David Hwang | Tereza Martinu | Bryan Coburn

Associations among dietary non-fiber carbohydrate, ruminal microbiota and epithelium G-protein-coupled receptor, and histone deacetylase regulations in goats

JOURNAL ARTICLE published December 2017 in Microbiome

Research funded by the Chinese National“973” Project (2011CB100801) | Project Grant Natural Science Foundation of Jiangsu Province (BK20150654) | Independent Innovation Project of Nanjing Agriculture University (KYZZ01628)

Authors: Hong Shen | Zhongyan Lu | Zhihui Xu | Zhan Chen | Zanming Shen

Gut microbiota is associated with the effect of photoperiod on seasonal breeding in male Brandt’s voles (Lasiopodomys brandtii)

JOURNAL ARTICLE published 15 November 2022 in Microbiome

Authors: Hanyi Zhu | Guoliang Li | Jing Liu | Xiaoming Xu | Zhibin Zhang

Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads

JOURNAL ARTICLE published December 2017 in Microbiome

Authors: Daniel H. Huson | Rewati Tappu | Adam L Bazinet | Chao Xie | Michael P. Cummings | Kay Nieselt | Rohan Williams

A microbial causal mediation analytic tool for health disparity and applications in body mass index

JOURNAL ARTICLE published 27 July 2023 in Microbiome

Research funded by The National Institutes of Health (NIH) National Institute on Minority Health and Health Disparities (U54MD000538) | The National Cancer Institute (P20CA252728,P20CA252728,P20CA252728,P20CA252728) | The National Library of Medicine (1R01LM014085-01A1)

Authors: Chan Wang | Jiyoung Ahn | Thaddeus Tarpey | Stella S. Yi | Richard B. Hayes | Huilin Li

A glimpse of the paleome in endolithic microbial communities

JOURNAL ARTICLE published 25 September 2023 in Microbiome

Research funded by Deutsche Forschungsgemeinschaft (CRC 1076 AquaDiva - Project-ID 218627073,CRC 1076 AquaDiva - Project-ID 218627073,CRC 1076 AquaDiva - Project-ID 218627073,CRC 1076 AquaDiva - Project-ID 218627073,EXC 2051 – Project-ID 390713860)

Authors: Carl-Eric Wegner | Raphaela Stahl | Irina Velsko | Alex Hübner | Zandra Fagernäs | Christina Warinner | Robert Lehmann | Thomas Ritschel | Kai U. Totsche | Kirsten Küsel

Stratified microbial communities in Australia’s only anchialine cave are taxonomically novel and drive chemotrophic energy production via coupled nitrogen-sulphur cycling

JOURNAL ARTICLE published 26 August 2023 in Microbiome

Research funded by Australian Research Council, Australia (FL140100021)

Authors: Timothy M. Ghaly | Amaranta Focardi | Liam D. H. Elbourne | Brodie Sutcliffe | William Humphreys | Ian T. Paulsen | Sasha G. Tetu

Relative abundance data can misrepresent heritability of the microbiome

JOURNAL ARTICLE published 9 October 2023 in Microbiome

Research funded by Nederlandse Organisatie voor Wetenschappelijk Onderzoek (019.192EN.017) | National Science Foundation (DGE1656466,1754494,1754494,1754494)

Authors: Marjolein Bruijning | Julien F. Ayroles | Lucas P. Henry | Britt Koskella | Kyle M. Meyer | C. Jessica E. Metcalf

Murine norovirus infection does not cause major disruptions in the murine intestinal microbiota

JOURNAL ARTICLE published December 2013 in Microbiome

Authors: Adam M Nelson | Michael D Elftman | Amelia K Pinto | Megan Baldridge | Patrick Hooper | Justin Kuczynski | Joseph F Petrosino | Vincent B Young | Christiane E Wobus

Aedes aegypti microbiome composition covaries with the density of Wolbachia infection

JOURNAL ARTICLE published 17 November 2023 in Microbiome

Authors: Jane Pascar | Henry Middleton | Steve Dorus

Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community

JOURNAL ARTICLE published December 2020 in Microbiome

Authors: Pratibha Panwar | Michelle A. Allen | Timothy J. Williams | Alyce M. Hancock | Sarah Brazendale | James Bevington | Simon Roux | David Páez-Espino | Stephen Nayfach | Maureen Berg | Frederik Schulz | I-Min A. Chen | Marcel Huntemann | Nicole Shapiro | Nikos C. Kyrpides | Tanja Woyke | Emiley A. Eloe-Fadrosh | Ricardo Cavicchioli

Microbial Tracking-2, a metagenomics analysis of bacteria and fungi onboard the International Space Station

JOURNAL ARTICLE published December 2022 in Microbiome

Research funded by National Aeronautics and Space Administration (NNH14ZTT002N,NASA Postdoctorsal Program Fellowship,80NSSC18K0113,80NSSC18K0113)

Authors: Camilla Urbaniak | Michael D. Morrison | James B. Thissen | Fathi Karouia | David J. Smith | Satish Mehta | Crystal Jaing | Kasthuri Venkateswaran

Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality

JOURNAL ARTICLE published December 2018 in Microbiome

Authors: Ramona Marasco | Eleonora Rolli | Marco Fusi | Grégoire Michoud | Daniele Daffonchio

Genomic and metagenomic insights into the microbial community of a thermal spring

JOURNAL ARTICLE published December 2019 in Microbiome

Research funded by Fondazione Cassa Di Risparmio Di Trento E Rovereto (2731/16)

Authors: Renato Pedron | Alfonso Esposito | Irene Bianconi | Edoardo Pasolli | Adrian Tett | Francesco Asnicar | Mario Cristofolini | Nicola Segata | Olivier Jousson

Should we modulate the neonatal microbiome and what should be the goal?

JOURNAL ARTICLE published December 2022 in Microbiome

Authors: Niels van Best | Maria Gloria Dominguez-Bello | Mathias W. Hornef | Eldin Jašarević | Katri Korpela | Trevor D. Lawley

Endogenous small intestinal microbiome determinants of transient colonisation efficiency by bacteria from fermented dairy products: a randomised controlled trial

JOURNAL ARTICLE published 7 March 2023 in Microbiome

Research funded by Danone Research (INSIDE:PLF-8712-GD,INSIDE:PLF-8712-GD,INSIDE:PLF-8712-GD,INSIDE:PLF-8712-GD,INSIDE:PLF-8712-GD)

Authors: Edoardo Zaccaria | Tim Klaassen | Annick M. E. Alleleyn | Jos Boekhorst | Tamara Smokvina | Michiel Kleerebezem | Freddy J. Troost

Wild eel microbiome reveals that skin mucus of fish could be a natural niche for aquatic mucosal pathogen evolution

JOURNAL ARTICLE published December 2017 in Microbiome

Research funded by Secretaría de Estado de Investigación, Desarrollo e Innovación (BES-2012-052361,AGL2014-58933-P (cofunded with FEDER funds)) | Grantová Agentura České Republiky (17-04828S) | AEI/FEDER/EU (CGL2016-76273-P [AEI/FEDER, EU]) | Dirección General de Investigación Científica y Técnica (CGL2015-71523-REDC (Acciones de dinamización “REDES DE EXCELENCIA” CONSOLIDER)) | Generalitat Valenciana (Prometeo II/2014/012 "AQUAMET")

Authors: Miguel Carda-Diéguez | Rohit Ghai | Francisco Rodríguez-Valera | Carmen Amaro

The effects of intestinal microbial community structure on disease manifestation in IL-10-/- mice infected with Helicobacter hepaticus

JOURNAL ARTICLE published December 2013 in Microbiome

Authors: Nabeetha A Nagalingam | Courtney J Robinson | Ingrid L Bergin | Kathryn A Eaton | Gary B Huffnagle | Vincent B Young

Understanding microbial community dynamics to improve optimal microbiome selection

JOURNAL ARTICLE published December 2019 in Microbiome

Research funded by Natural Environment Research Council (NE/K009044/1) | Biotechnology and Biological Sciences Research Council (BB/M01116X/1) | European Research Council (638631)

Authors: Robyn J. Wright | Matthew I. Gibson | Joseph A. Christie-Oleza