Task-Dependent Changes in Cross-Level Coupling between Single Neurons and Oscillatory Activity in Multiscale Networks

JOURNAL ARTICLE published 20 December 2012 in PLoS Computational Biology

Authors: Ryan T. Canolty | Karunesh Ganguly | Jose M. Carmena

Editors: Olaf Sporns

Ultrasensitization: Switch-Like Regulation of Cellular Signaling by Transcriptional Induction

JOURNAL ARTICLE published 28 October 2005 in PLoS Computational Biology

Authors: Stefan Legewie | Nils Blüthgen | Reinhold Schäfer | Hanspeter Herzel

Editors: Satoru Miyano

Disentangling the Complexity of HGF Signaling by Combining Qualitative and Quantitative Modeling

JOURNAL ARTICLE published 23 April 2015 in PLOS Computational Biology

Authors: Lorenza A. D’Alessandro | Regina Samaga | Tim Maiwald | Seong-Hwan Rho | Sandra Bonefas | Andreas Raue | Nao Iwamoto | Alexandra Kienast | Katharina Waldow | Rene Meyer | Marcel Schilling | Jens Timmer | Steffen Klamt | Ursula Klingmüller

Editors: Anand R. Asthagiri

A generative growth model for thalamocortical axonal branching in primary visual cortex

JOURNAL ARTICLE published 13 February 2020 in PLOS Computational Biology

Authors: Pegah Kassraian-Fard | Michael Pfeiffer | Roman Bauer

Editors: Geoffrey J Goodhill

Can subjective pain be inferred from objective physiological data? Evidence from patients with sickle cell disease

JOURNAL ARTICLE published 11 March 2021 in PLOS Computational Biology

Research funded by National Institutes of Health (1R01AT010413-01)

Authors: Mark J. Panaggio | Daniel M. Abrams | Fan Yang | Tanvi Banerjee | Nirmish R. Shah

Editors: George Em Karniadakis

Scientific Software Development Is Not an Oxymoron

JOURNAL ARTICLE published 2006 in PLoS Computational Biology

Authors: Susan M. Baxter | Steven W. Day | Jacquelyn S. Fetrow | Stephanie J. Reisinger

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

JOURNAL ARTICLE published 28 October 2021 in PLOS Computational Biology

Research funded by National Institute of General Medical Sciences (GM088849) | National Institute of General Medical Sciences (GM089636) | National Science Foundation Directorate for Biological Sciences - Emerging Frontiers (EF-0949351) | National Science Foundation Directorate for Biological Sciences - Biological Infrastructure (DBI-1565146) | Director, Office of Science, Office of Basic Energy Science, of the U.S. Department of Energy (DE-AC02-05CH11231)

Authors: Jolene Ramsey | Brenley McIntosh | Daniel Renfro | Suzanne A. Aleksander | Sandra LaBonte | Curtis Ross | Adrienne E. Zweifel | Nathan Liles | Shabnam Farrar | Jason J. Gill | Ivan Erill | Sarah Ades | Tanya Z. Berardini | Jennifer A. Bennett | Siobhan Brady | Robert Britton | Seth Carbon | Steven M. Caruso | Dave Clements | Ritu Dalia | Meredith Defelice | Erin L. Doyle | Iddo Friedberg | Susan M. R. Gurney | Lee Hughes | Allison Johnson | Jason M. Kowalski | Donghui Li | Ruth C. Lovering | Tamara L. Mans | Fiona McCarthy | Sean D. Moore | Rebecca Murphy | Timothy D. Paustian | Sarah Perdue | Celeste N. Peterson | Birgit M. Prüß | Margaret S. Saha | Robert R. Sheehy | John T. Tansey | Louise Temple | Alexander William Thorman | Saul Trevino | Amy Cheng Vollmer | Virginia Walbot | Joanne Willey | Deborah A. Siegele | James C. Hu

Editors: Francis Ouellette

A Report of the Curriculum Task Force of the ISCB Education Committee

JOURNAL ARTICLE published 28 June 2012 in PLoS Computational Biology

Authors: Lonnie R. Welch | Russell Schwartz | Fran Lewitter

Editors: Philip E. Bourne

Moving Education Forward, Again!

JOURNAL ARTICLE published 12 December 2013 in PLoS Computational Biology

Authors: Fran Lewitter

A joint modeling approach for longitudinal microbiome data improves ability to detect microbiome associations with disease

JOURNAL ARTICLE published 14 December 2020 in PLOS Computational Biology

Research funded by National Institute of Allergy and Infectious Diseases (R01 AI108588)

Authors: Pamela N. Luna | Jonathan M. Mansbach | Chad A. Shaw

Editors: Benjamin Muir Althouse

MAGPIE: Simplifying access and execution of computational models in the life sciences

JOURNAL ARTICLE published 15 December 2017 in PLOS Computational Biology

Research funded by Bundesministerium für Bildung und Forschung (DE) (031A315) | Bundesministerium für Bildung und Forschung (DE) (031A424)

Authors: Christoph Baldow | Sebastian Salentin | Michael Schroeder | Ingo Roeder | Ingmar Glauche

Editors: Timothée Poisot

The Interplay between Wnt Mediated Expansion and Negative Regulation of Growth Promotes Robust Intestinal Crypt Structure and Homeostasis

JOURNAL ARTICLE published 19 August 2015 in PLOS Computational Biology

Authors: Huijing Du | Qing Nie | William R. Holmes

Editors: Carina M Dunlop

Computing Average Passive Forces in Sarcomeres in Length-Ramp Simulations

JOURNAL ARTICLE published 8 June 2016 in PLOS Computational Biology

Research funded by Austrian Science Fund (T478-N13)

Authors: Gudrun Schappacher-Tilp | Timothy Leonard | Gertrud Desch | Walter Herzog

Editors: Andrew D. McCulloch

Modelling novelty detection in the thalamocortical loop

JOURNAL ARTICLE published 15 May 2023 in PLOS Computational Biology

Research funded by Wellcome Trust (110149/Z/15/Z)

Authors: Chao Han | Gwendolyn English | Hannes P. Saal | Giacomo Indiveri | Aditya Gilra | Wolfger von der Behrens | Eleni Vasilaki

Editors: Boris S. Gutkin

A Novel Bayesian Method for Detection of APOBEC3-Mediated Hypermutation and Its Application to Zoonotic Transmission of Simian Foamy Viruses

JOURNAL ARTICLE published 27 February 2014 in PLoS Computational Biology

Authors: Frederick A. Matsen | Christopher T. Small | Khanh Soliven | Gregory A. Engel | Mostafa M. Feeroz | Xiaoxing Wang | Karen L. Craig | M. Kamrul Hasan | Michael Emerman | Maxine L. Linial | Lisa Jones-Engel

Editors: Sergei L. Kosakovsky Pond

A master equation approach to actin polymerization applied to endocytosis in yeast

JOURNAL ARTICLE published 14 December 2017 in PLOS Computational Biology

Research funded by National Institute of General Medical Sciences (GM107667) | National Science Foundation (CMMI:15-458571)

Authors: Xinxin Wang | Anders E. Carlsson

Editors: Anand R. Asthagiri

Reproducibility efforts as a teaching tool: A pilot study

JOURNAL ARTICLE published 10 November 2022 in PLOS Computational Biology

Authors: Nestoras Karathanasis | Daniel Hwang | Vibol Heng | Rimal Abhimannyu | Phillip Slogoff-Sevilla | Gina Buchel | Victoria Frisbie | Peiyao Li | Dafni Kryoneriti | Isidore Rigoutsos

Editors: Francis Ouellette

The ISCB: Growing and Evolving in Step with Science

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Michael Gribskov

Genomic sequence is highly predictive of local nucleosome depletion

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Guo-Cheng Yuan | Jun S Liu

Differentiating Positive Selection from Acceleration and Relaxation in Human and Chimp

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Leonardo Arbiza | Joaquín Dopazo | Hernan Javier Dopazo