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A significant risk locus on 19q13 for bipolar disorder identified using a combined genome-wide linkage and copy number variation analysis

JOURNAL ARTICLE published June 2015 in BioData Mining

Research funded by Vetenskapsrådet (SE) (Reference Number 2005-6929 and L2010-61x-20377-04-3) | Stiftelsen för Strategisk Forskning (SE) (Reference Number A3 05:207b)

Authors: Magnus Lekman | Robert Karlsson | Lisette Graae | Ola Hössjer | Ingrid Kockum

https://doi.org/10.1186/s13040-015-0076-y Actions

How do alignment programs perform on sequencing data with varying qualities and from repetitive regions?

JOURNAL ARTICLE published December 2012 in BioData Mining

Authors: Xiaoqing Yu | Kishore Guda | Joseph Willis | Martina Veigl | Zhenghe Wang | Sanford Markowitz | Mark D Adams | Shuying Sun

https://doi.org/10.1186/1756-0381-5-6 Actions

No-boundary thinking in bioinformatics research

JOURNAL ARTICLE published December 2013 in BioData Mining

Authors: Xiuzhen Huang | Barry Bruce | Alison Buchan | Clare Bates Congdon | Carole L Cramer | Steven F Jennings | Hongmei Jiang | Zenglu Li | Gail McClure | Rick McMullen | Jason H Moore | Bindu Nanduri | Joan Peckham | Andy Perkins | Shawn W Polson | Bhanu Rekepalli | Saeed Salem | Jennifer Specker | Donald Wunsch | Donghai Xiong | Shuzhong Zhang | Zhongming Zhao

https://doi.org/10.1186/1756-0381-6-19 Actions

Gene set analysis methods: a systematic comparison

JOURNAL ARTICLE published December 2018 in BioData Mining

Research funded by National Cancer Institute (5R01CA161608) | National Heart, Lung, and Blood Institute (1K01HL124050-01A1) | National Institute of General Medical Sciences (P01 CA142538,1R01GM114029-01A1)

Authors: Ravi Mathur | Daniel Rotroff | Jun Ma | Ali Shojaie | Alison Motsinger-Reif

https://doi.org/10.1186/s13040-018-0166-8 Actions

Fast Gene Ontology based clustering for microarray experiments

JOURNAL ARTICLE published December 2008 in BioData Mining

Authors: Kristian Ovaska | Marko Laakso | Sampsa Hautaniemi

https://doi.org/10.1186/1756-0381-1-11 Actions

Merging microarray studies to identify a common gene expression signature to several structural heart diseases

JOURNAL ARTICLE published December 2020 in BioData Mining

Authors: Olga Fajarda | Sara Duarte-Pereira | Raquel M. Silva | José Luís Oliveira

https://doi.org/10.1186/s13040-020-00217-8 Actions

Neural network-based prognostic predictive tool for gastric cardiac cancer: the worldwide retrospective study

JOURNAL ARTICLE published 18 July 2023 in BioData Mining

Research funded by Beijing Natural Science Foundation (7212107)

Authors: Wei Li | Minghang Zhang | Siyu Cai | Liangliang Wu | Chao Li | Yuqi He | Guibin Yang | Jinghui Wang | Yuanming Pan

https://doi.org/10.1186/s13040-023-00335-z Actions

A particle swarm optimization-based algorithm for finding gapped motifs

JOURNAL ARTICLE published December 2010 in BioData Mining

Authors: Chengwei Lei | Jianhua Ruan

https://doi.org/10.1186/1756-0381-3-9 Actions

Combining DNA methylation and RNA sequencing data of cancer for supervised knowledge extraction

JOURNAL ARTICLE published December 2018 in BioData Mining

Research funded by Nanomax Flagship Project (B81J12006270001) | GeCo (693174) | MoDiag Regione Lazio Project (A0112-2016-13363)

Authors: Eleonora Cappelli | Giovanni Felici | Emanuel Weitschek

https://doi.org/10.1186/s13040-018-0184-6 Actions

Extraction of pure components from overlapped signals in gas chromatography-mass spectrometry (GC-MS)

JOURNAL ARTICLE published December 2009 in BioData Mining

Authors: Vladimir A Likić

https://doi.org/10.1186/1756-0381-2-6 Actions

Next generation informatics for big data in precision medicine era

JOURNAL ARTICLE published June 2015 in BioData Mining

Authors: Yuji Zhang | Qian Zhu | Hongfang Liu

https://doi.org/10.1186/s13040-015-0064-2 Actions

Prescription pattern analysis of Type 2 Diabetes Mellitus: a cross-sectional study in Isfahan, Iran

JOURNAL ARTICLE published 20 October 2023 in BioData Mining

Authors: Elnaz Ziad | Somayeh Sadat | Farshad Farzadfar | Mohammad-Reza Malekpour

https://doi.org/10.1186/s13040-023-00344-y Actions

Investigating the relationship between mitochondrial genetic variation and cardiovascular-related traits to develop a framework for mitochondrial phenome-wide association studies

JOURNAL ARTICLE published December 2014 in BioData Mining

Authors: Sabrina L Mitchell | Jacob B Hall | Robert J Goodloe | Jonathan Boston | Eric Farber-Eger | Sarah A Pendergrass | William S Bush | Dana C Crawford

https://doi.org/10.1186/1756-0381-7-6 Actions

Knowledge-driven genomic interactions: an application in ovarian cancer

JOURNAL ARTICLE published December 2014 in BioData Mining

Authors: Dokyoon Kim | Ruowang Li | Scott M Dudek | Alex T Frase | Sarah A Pendergrass | Marylyn D Ritchie

https://doi.org/10.1186/1756-0381-7-20 Actions

Disclosing transcriptomics network-based signatures of glioma heterogeneity using sparse methods

JOURNAL ARTICLE published 26 September 2023 in BioData Mining

Research funded by Fundação para a Ciência e a Tecnologia (CEECINST/00102/2018)

Authors: Sofia Martins | Roberta Coletti | Marta B. Lopes

https://doi.org/10.1186/s13040-023-00341-1 Actions

gammaMAXT: a fast multiple-testing correction algorithm

JOURNAL ARTICLE published June 2015 in BioData Mining

Authors: François Van Lishout | Francesco Gadaleta | Jason H. Moore | Louis Wehenkel | Kristel Van Steen

https://doi.org/10.1186/s13040-015-0069-x Actions

MOCAT: multi-omics integration with auxiliary classifiers enhanced autoencoder

JOURNAL ARTICLE published 5 March 2024 in BioData Mining

Research funded by National Natural Science Foundation of China (62102115,62103116) | Shandong Provincial Natural Science Foundation (2022HWYQ-093) | Natural Science Foundation of Heilongjiang Province (LH2022F016,LH2022F016) | Fundamental Research Funds for the Central Universities (3072022TS2614) | National Key Research and Development Program of China (2022YFB4703500,2022YFB4703500)

Authors: Xiaohui Yao | Xiaohan Jiang | Haoran Luo | Hong Liang | Xiufen Ye | Yanhui Wei | Shan Cong

https://doi.org/10.1186/s13040-024-00360-6 Actions

LoFTK: a framework for fully automated calculation of predicted Loss-of-Function variants and genes

JOURNAL ARTICLE published 2 February 2023 in BioData Mining

Research funded by King Abdullah International Medical Research Center (400016184) | National Institutes of Health (LM010098,LM010098,LM010098,LM010098) | the Netherlands CardioVascular Research Initiative (CVON 2011/B019) | Innovative Medicines Initiative (116074,116074) | Dutch Heart Foundation (2017T003)

Authors: Abdulrahman Alasiri | Konrad J. Karczewski | Brian Cole | Bao-Li Loza | Jason H. Moore | Sander W. van der Laan | Folkert W. Asselbergs | Brendan J. Keating | Jessica van Setten

https://doi.org/10.1186/s13040-023-00321-5 Actions

Knomics-Biota - a system for exploratory analysis of human gut microbiota data

JOURNAL ARTICLE published December 2018 in BioData Mining

Research funded by Fund for Development of the Center for Elaboration and Commercialization of New Technologies ‘Skolkovo’ (G94/16)

Authors: Daria Efimova | Alexander Tyakht | Anna Popenko | Anatoly Vasilyev | Ilya Altukhov | Nikita Dovidchenko | Vera Odintsova | Natalya Klimenko | Robert Loshkarev | Maria Pashkova | Anna Elizarova | Viktoriya Voroshilova | Sergei Slavskii | Yury Pekov | Ekaterina Filippova | Tatiana Shashkova | Evgenii Levin | Dmitry Alexeev

https://doi.org/10.1186/s13040-018-0187-3 Actions

Machine learning and statistical approaches for classification of risk of coronary artery disease using plasma cytokines

JOURNAL ARTICLE published December 2021 in BioData Mining

Research funded by U.S. Public Health Service (2T32HL007731-26)

Authors: Seema Singh Saharan | Pankaj Nagar | Kate Townsend Creasy | Eveline O. Stock | James Feng | Mary J. Malloy | John P. Kane

https://doi.org/10.1186/s13040-021-00260-z Actions
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