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Characterizing therapeutic signatures of transcription factors in cancer by incorporating profiles in compound treated cells JOURNAL ARTICLE published 17 May 2021 in Bioinformatics Research funded by Korea government (NRF-2019R1G1A1099644) |
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Protein analyst--a distributed object environment for protein sequence and structure analysis. JOURNAL ARTICLE published 1 June 1999 in Bioinformatics |
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A scalable moment-closure approximation for large-scale biochemical reaction networks JOURNAL ARTICLE published 15 July 2017 in Bioinformatics |
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ARCS: an aggregated related column scoring scheme for aligned sequences JOURNAL ARTICLE published 1 October 2006 in Bioinformatics |
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ISQuest: finding insertion sequences in prokaryotic sequence fragment data JOURNAL ARTICLE published 1 November 2015 in Bioinformatics |
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SCORE: Smart Consensus Of RNA Expression—a consensus tool for detecting differentially expressed genes in bacteria JOURNAL ARTICLE published 20 April 2021 in Bioinformatics |
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2018 ISCB Overton Prize awarded to Cole Trapnell JOURNAL ARTICLE published 1 July 2018 in Bioinformatics |
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Robust unmixing of tumor states in array comparative genomic hybridization data JOURNAL ARTICLE published 15 June 2010 in Bioinformatics |
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An adjustable-threshold algorithm for the identification of objects in three-dimensional images JOURNAL ARTICLE published 22 July 2003 in Bioinformatics |
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Probabilistic inference of molecular networks from noisy data sources JOURNAL ARTICLE published 22 May 2004 in Bioinformatics |
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DoubleRecViz: a web-based tool for visualizing transcript–gene–species tree reconciliation JOURNAL ARTICLE published 27 July 2021 in Bioinformatics Research funded by Mitacs accelaration program and Plotly Inc (IT11886) | Canada Research Chair [CRC Tier 2 (950-230577) |
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Forecasting residue–residue contact prediction accuracy JOURNAL ARTICLE published 1 November 2017 in Bioinformatics Research funded by Polish National Science Centre (DEC-2016/20/T/NZ1/00514) | National Institutes of Health (R01GM089753) | National Science Foundation (DBI-1564955) |
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MethRaFo: MeDIP-seq methylation estimate using a Random Forest Regressor JOURNAL ARTICLE published 1 November 2017 in Bioinformatics Research funded by National Institutes of Health (U01HL122626-01) | National Science Foundation (DBI-1356505) | Pennsylvania Department of Health (4100070287) |
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xGAP: a python based efficient, modular, extensible and fault tolerant genomic analysis pipeline for variant discovery JOURNAL ARTICLE published 9 April 2021 in Bioinformatics Research funded by National Institute of Environmental Health Sciences (K01 ES028064) | National Science Foundation (#1705197) | National Institute of Neurological Disorders and Stroke (R01 NS102371) |
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Ontology quality assurance through analysis of term transformations JOURNAL ARTICLE published 15 June 2009 in Bioinformatics |
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KAPPA, a simple algorithm for discovery and clustering of proteins defined by a key amino acid pattern: a case study of the cysteine-rich proteins JOURNAL ARTICLE published 1 June 2015 in Bioinformatics |
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Genome-wide selection of tag SNPs using multiple-marker correlation JOURNAL ARTICLE published 1 December 2007 in Bioinformatics |
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MEANS: python package for Moment Expansion Approximation, iNference and Simulation JOURNAL ARTICLE published 15 September 2016 in Bioinformatics |
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Erratum to: EpiGraphDB: a database and data mining platform for health data science JOURNAL ARTICLE published 19 April 2021 in Bioinformatics |
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CIRCOAST: a statistical hypothesis test for cellular colocalization with network structures JOURNAL ARTICLE published 15 February 2019 in Bioinformatics |