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Bacterial quorum sensing orchestrates longitudinal interactions to shape microbiota assembly JOURNAL ARTICLE published 6 November 2023 in Microbiome Research funded by Basic and Applied Basic Research Foundation of Guangdong Province (2022A1515011912) | China Postdoctoral Science Foundation (2021M703758) | National Natural Science Foundation of China (81971906) | Guangdong Key Area Research and Development Program (2019B020228001) |
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A reverse metabolic approach to weaning: in silico identification of immune-beneficial infant gut bacteria, mining their metabolism for prebiotic feeds and sourcing these feeds in the natural product space JOURNAL ARTICLE published December 2018 in Microbiome Research funded by New Zealand National Science Challenge "High-Value Nutrition": "Complementary Infant Feeding" (3713256) |
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Erratum to: Prolonged use of a proton pump inhibitor reduces microbial diversity: implications for Clostridium difficile susceptibility JOURNAL ARTICLE published December 2016 in Microbiome |
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Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments JOURNAL ARTICLE published 3 January 2024 in Microbiome Research funded by Queen Mary University of London (PhD Scholarship) | Natural Environment Research Council (NE/S007725/1) | Joint Genome Institute (10.46936/10.25585/60001216) |
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Alternative stable states in the intestinal ecosystem: proof of concept in a rat model and a perspective of therapeutic implications JOURNAL ARTICLE published December 2020 in Microbiome Research funded by European Commission (ERC-2017-AdG n. 788191 - Homo.symbiosus) |
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A consortia of clinical E. coli strains with distinct in vitro adherent/invasive properties establish their own co-colonization niche and shape the intestinal microbiota in inflammation-susceptible mice JOURNAL ARTICLE published 20 December 2023 in Microbiome Research funded by National Institute of General Medical Sciences,United States (K12 GM000678-21) | National Institute of Allergy and Infectious Diseases,United States (R21 AI159786) | National Institutes of Health (P30DK034987) |
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Growth rate determines prokaryote-provirus network modulated by temperature and host genetic traits JOURNAL ARTICLE published 14 June 2022 in Microbiome Research funded by National Natural Science Foundation of China (91851206,91851117) | National Nature Science Foundation of China (41877345) | National Key Research and Development Program by the Ministry of Science and Technology of China (2018YFE0110200) | Key Research and Development Program of Hunan Province (S2020GCZDYF1057) |
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Selected commensals educate the intestinal vascular and immune system for immunocompetence JOURNAL ARTICLE published 28 September 2022 in Microbiome |
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Variable responses of human and non-human primate gut microbiomes to a Western diet JOURNAL ARTICLE published December 2015 in Microbiome Research funded by National Science Foundation (0935347) | National Science Foundation (BCS-0820709) | National Center for Research Resources (RR019963) | VA (VA247-P-0447) | National Institutes of Health (5R01RR016300) |
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Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data JOURNAL ARTICLE published December 2019 in Microbiome Research funded by National Research Foundation Singapore (0) | Deutsche Forschungsgemeinschaft (INST~37/935-1 FUGG) | Deutsche Forschungsgemeinschaft (HU 566/12-1) |
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Comparative metabolomic analysis reveals shared and unique chemical interactions in sponge holobionts JOURNAL ARTICLE published 1 February 2022 in Microbiome |
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Integrated multi-omics analysis reveals the positive leverage of citrus flavonoids on hindgut microbiota and host homeostasis by modulating sphingolipid metabolism in mid-lactation dairy cows consuming a high-starch diet JOURNAL ARTICLE published 25 October 2023 in Microbiome Research funded by Beijing Municipal Natural Science Foundation (6232004) | China Postdoctoral Science Foundation (2022M710181) | Beijing Postdoctoral Research Foundation (2022-ZZ-129) |
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The fusion of multi-omics profile and multimodal EEG data contributes to the personalized diagnostic strategy for neurocognitive disorders JOURNAL ARTICLE published 19 January 2024 in Microbiome Research funded by Science and Technology Development Fund, Macau SAR (0106/2019/A2) | University of Macau (MYRG-CRG2022-00011-ICMS) |
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Gut-derived metabolites influence neurodevelopmental gene expression and Wnt signaling events in a germ-free zebrafish model JOURNAL ARTICLE published 23 August 2022 in Microbiome |
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Deep-sea Bacteroidetes from the Mariana Trench specialize in hemicellulose and pectin degradation typically associated with terrestrial systems JOURNAL ARTICLE published 7 August 2023 in Microbiome Research funded by Biotechnology and Biological Sciences Research Council (BB/X005968) | Natural Environmental Research Council, UK (NE/P012671, NE/S001352, NE/X000990, NE/X014428) | National Natural Science Foundation of China (92251303,41976101, 92051115) | Natural Science Foundation of Shandong Province (ZR2022YQ38) |
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Rapid remodeling of the soil lipidome in response to a drying-rewetting event JOURNAL ARTICLE published 27 February 2023 in Microbiome Research funded by U.S. Department of Energy (FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880,FWP 70880) |
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Trait-based analysis of the human skin microbiome JOURNAL ARTICLE published December 2019 in Microbiome Research funded by Army Research Office (#W911NF-14-1-0490) |
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A high-throughput sequencing assay to comprehensively detect and characterize unicellular eukaryotes and helminths from biological and environmental samples JOURNAL ARTICLE published December 2018 in Microbiome |
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All hail reproducibility in microbiome research JOURNAL ARTICLE published December 2014 in Microbiome |
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Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome JOURNAL ARTICLE published December 2021 in Microbiome Research funded by National Natural Science Foundation of China (31701577) | National Institutes of Health (T32 OD017863,K08 DK102902,R01AI141529, R01HD093761, R01AG067744) | NIDDK (P30 DK120515, P30 DK063491, and UL1 TR001442) | National Center for Complementary and Integrative Health (DP1-AT010885) |