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A drug repurposing method based on inhibition effect on gene regulatory network

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Xianbin Li | Minzhen Liao | Bing Wang | Xiangzhen Zan | Yanhao Huo | Yue Liu | Zhenshen Bao | Peng Xu | Wenbin Liu

https://doi.org/10.1016/j.csbj.2023.09.007 Actions

Method development for cross-study microbiome data mining: Challenges and opportunities

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Xiaoquan Su | Gongchao Jing | Yufeng Zhang | Shunyao Wu

https://doi.org/10.1016/j.csbj.2020.07.020 Actions

Mitotic chromosome organization: General rules meet species-specific variability

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Tomáš Beseda | Petr Cápal | Ivona Kubalová | Veit Schubert | Jaroslav Doležel | Hana Šimková

https://doi.org/10.1016/j.csbj.2020.01.006 Actions

Epigenetic modifications: Allusive clues of lncRNA functions in plants

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Wenjing Yang | Quanzi Bai | Yan Li | Jianghua Chen | Changning Liu

https://doi.org/10.1016/j.csbj.2023.03.008 Actions

Recursive Motif Analyses Identify Brain Epigenetic Transcription Regulatory Modules

JOURNAL ARTICLE published 2019 in Computational and Structural Biotechnology Journal

Research funded by NIH (NS094574)

Authors: Sharmi Banerjee | Xiaoran Wei | Hehuang Xie

https://doi.org/10.1016/j.csbj.2019.04.003 Actions

A computational analysis of transcriptional profiles from CD8(+) T lymphocytes reveals potential mechanisms of HIV/AIDS control and progression

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Sergey Ivanov | Dmitry Filimonov | Olga Tarasova

https://doi.org/10.1016/j.csbj.2021.04.056 Actions

COSMO: A dynamic programming algorithm for multicriteria codon optimization

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Akito Taneda | Kiyoshi Asai

https://doi.org/10.1016/j.csbj.2020.06.035 Actions

Dissecting nucleotide selectivity in viral RNA polymerases

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Chunhong Long | Moises Ernesto Romero | Daniel La Rocco | Jin Yu

https://doi.org/10.1016/j.csbj.2021.06.005 Actions

A murine model to study the gut bacteria parameters during complex antibiotics like cefotaxime and ceftriaxone treatment

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Matthieu Grégoire | Florian Berteau | Ronan Bellouard | Quentin Lebastard | Philippe Aubert | Jacques Gonzales | François Javaudin | Anne Bessard | Pascale Bemer | Éric Batard | Didier Lepelletier | Michel Neunlist | Emmanuel Montassier | Éric Dailly

https://doi.org/10.1016/j.csbj.2021.02.019 Actions

Maize specialized metabolome networks reveal organ-preferential mixed glycosides

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Sandrien Desmet | Yvan Saeys | Kevin Verstaen | Rebecca Dauwe | Hoon Kim | Claudiu Niculaes | Atsushi Fukushima | Geert Goeminne | Ruben Vanholme | John Ralph | Wout Boerjan | Kris Morreel

https://doi.org/10.1016/j.csbj.2021.01.004 Actions

Two alternative conformations of mRNA in the human ribosome during elongation and termination of translation as revealed by EPR spectroscopy

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Konstantin N. Bulygin | Ivan O. Timofeev | Alexey A. Malygin | Dmitri M. Graifer | Maria I. Meschaninova | Alya G. Venyaminova | Olesya A. Krumkacheva | Matvey V. Fedin | Ludmila Yu. Frolova | Galina G. Karpova | Elena G. Bagryanskaya

https://doi.org/10.1016/j.csbj.2021.08.024 Actions

Structure and compositional analysis of aluminum oxyhydroxide adsorbed pertussis vaccine

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Jessica Duprez | Kristen Kalbfleisch | Sasmit Deshmukh | Jessie Payne | Manjit Haer | Wayne Williams | Ibrahim Durowoju | Marina Kirkitadze

https://doi.org/10.1016/j.csbj.2020.12.023 Actions

Optimized Enzymatic Synthesis of Feruloyl Derivatives Catalyzed by Three Novel Feruloyl Esterases from Talaromyces wortmannii in Detergentless Microemulsions

JOURNAL ARTICLE published 2018 in Computational and Structural Biotechnology Journal

Research funded by European Commission (613868)

Authors: Io Antonopoulou | Laura Iancu | Peter Jütten | Alexander Piechot | Ulrika Rova | Paul Christakopoulos

https://doi.org/10.1016/j.csbj.2018.09.005 Actions

DeepScratch: Single-cell based topological metrics of scratch wound assays

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Research funded by Engineering and Physical Sciences Research Council (204724/Z/16/Z,EP/M013774/1)

Authors: Avelino Javer | Jens Rittscher | Heba Z. Sailem

https://doi.org/10.1016/j.csbj.2020.08.018 Actions

Immunopathology, host-virus genome interactions, and effective vaccine development in SARS-CoV-2

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Desh Deepak Singh | Ihn Han | Eun-Ha Choi | Dharmendra Kumar Yadav

https://doi.org/10.1016/j.csbj.2020.11.011 Actions

Permeation mechanisms through the selectivity filter and the open helix bundle crossing gate of GIRK2

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Research funded by Natural Science Foundation of Fujian province (2020J01259) | Xiamen University of Technology (E201300100,XPDKT19027)

Authors: Dai-Lin Li | Liang Hu | Lei Wang | Chin-Ling Chen

https://doi.org/10.1016/j.csbj.2020.11.039 Actions

Structural and functional properties of Antarctic fish cytoglobins-1: Cold-reactivity in multi-ligand reactions

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Daniela Giordano | Alessandra Pesce | Stijn Vermeylen | Stefania Abbruzzetti | Marco Nardini | Francesco Marchesani | Herald Berghmans | Constantí Seira | Stefano Bruno | F. Javier Luque | Guido di Prisco | Paolo Ascenzi | Sylvia Dewilde | Martino Bolognesi | Cristiano Viappiani | Cinzia Verde

https://doi.org/10.1016/j.csbj.2020.08.007 Actions

DeepMC-iNABP: Deep learning for multiclass identification and classification of nucleic acid-binding proteins

JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal

Authors: Feifei Cui | Shuang Li | Zilong Zhang | Miaomiao Sui | Chen Cao | Abd El-Latif Hesham | Quan Zou

https://doi.org/10.1016/j.csbj.2022.04.029 Actions

Genomic evidence for divergent co-infections of co-circulating SARS-CoV-2 lineages

JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal

Authors: Hang-Yu Zhou | Ye-Xiao Cheng | Lin Xu | Jia-Ying Li | Chen-Yue Tao | Cheng-Yang Ji | Na Han | Rong Yang | Hui Wu | Yaling Li | Aiping Wu

https://doi.org/10.1016/j.csbj.2022.07.042 Actions

Human endogenous retroviruses in development and disease

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Research funded by Hangzhou Science and Technology Bureau (20182014B01) | National Natural Science Foundation of China (31730020,31801155,32000512)

Authors: Jian Mao | Qian Zhang | Yu-Sheng Cong

https://doi.org/10.1016/j.csbj.2021.10.037 Actions
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