Multi-trait ensemble genomic prediction and simulations of recurrent selection highlight importance of complex trait genetic architecture for long-term genetic gains in wheat

JOURNAL ARTICLE published 1 January 2023 in in silico Plants

Research funded by Biotechnology and Biological Sciences Research Council (BB/M011666/1,BB/M011585/1,BB/M011194/1)

Authors: Nick Fradgley | Keith A Gardner | Alison R Bentley | Phil Howell | Ian J Mackay | Michael F Scott | Richard Mott | James Cockram

Editors: Graeme Hammer

A generic approach to modelling, allocation and redistribution of biomass to and from plant organs

JOURNAL ARTICLE published 1 January 2019 in in silico Plants

Authors: Hamish E Brown | Neil I Huth | Dean P Holzworth | Edmar I Teixeira | Enli Wang | Rob F Zyskowski | Bangyou Zheng

Systems models, phenomics and genomics: three pillars for developing high-yielding photosynthetically efficient crops

JOURNAL ARTICLE published 1 January 2019 in in silico Plants

Research funded by Strategic Priority Research Programme of the Chinese Academy of Sciences (XDB27020105,XDA08020301) | Bill and Melinda Gates Foundation (OPP1172157) | National High Technology Development Programme (2014AA101601)

Authors: Tian-Gen Chang | Shuoqi Chang | Qing-Feng Song | Shahnaz Perveen | Xin-Guang Zhu

Early Career Research Profile: Bethany Moore

JOURNAL ARTICLE published 1 January 2020 in in silico Plants

Authors: Bethany M Moore

Editors: Rachel Shekar

Modelling the functional dependency between root and shoot compartments to predict the impact of the environment on the architecture of the whole plant: methodology for model fitting on simulated data using Deep Learning techniques

JOURNAL ARTICLE published 1 January 2022 in in silico Plants

Authors: Abel Louis Masson | Yves Caraglio | Eric Nicolini | Philippe Borianne | Jean-Francois Barczi

Editors: Andrea Schnepf | Stephen P Long | Andrea Schnepf

Early Career Researcher Profile: Tsu-Wei Chen

JOURNAL ARTICLE published 1 January 2021 in in silico Plants

Authors: Tsu-Wei Chen | Rachel G Shekar

Editors: Rachel Shekar

Making our plant modelling community more than the sum of its parts: a personal perspective

JOURNAL ARTICLE published 1 January 2019 in in silico Plants

Authors: Stephen P Long

Plant Science Knowledge Graph Corpus: a gold standard entity and relation corpus for the molecular plant sciences

JOURNAL ARTICLE published 1 January 2024 in in silico Plants

Research funded by National Science Foundation (DGE-1828149) | the U.S. Department of Energy Great Lakes Bioenergy Research Center (BER DE-SC0018409) | National Science Foundation (DGE-1828149,IOS-2218206,IOS-2107215,MCB-2210431)

Authors: Serena Lotreck | Kenia Segura Abá | Melissa D Lehti-Shiu | Abigail Seeger | Brianna N I Brown | Thilanka Ranaweera | Ally Schumacher | Mohammad Ghassemi | Shin-Han Shiu

Editors: Amy Marshall-Colon

Using evolutionary functional–structural plant modelling to understand the effect of climate change on plant communities

JOURNAL ARTICLE published 1 July 2021 in in silico Plants

Research funded by ETH Zürich Postdoctoral Fellowship (19-2 FEL-72)

Authors: Jorad de Vries

Editors: Tsu-Wei Chen | Stephen P Long

Early Career Researcher Profile: Honglong Zhao

JOURNAL ARTICLE published 1 January 2021 in in silico Plants

Authors: Honglong Zhao | Rachel G Shekar

Editors: Rachel Shekar

Interactions between nitrogen nutrition, canopy architecture and photosynthesis in rice, assessed using high-resolution 3D reconstruction

JOURNAL ARTICLE published 1 January 2021 in in silico Plants

Research funded by Biotechnology and Biological Sciences Research Council (BB/R004633/1)

Authors: Alexandra J Burgess | Tiara Herman | Asgar Ali | Erik H Murchie

Editors: Xin-Guang Zhu

Water flow within and towards plant roots—a new concurrent solution

JOURNAL ARTICLE published 1 July 2023 in in silico Plants

Authors: Jan Graefe | Richard Pauwels | Michael Bitterlich

Editors: Xin-Guang Zhu

Simulating rhizodeposition patterns around growing and exuding root systems

JOURNAL ARTICLE published 1 July 2021 in in silico Plants

Research funded by German Research Foundation (403641034,390732324)

Authors: Magdalena Landl | Adrian Haupenthal | Daniel Leitner | Eva Kroener | Doris Vetterlein | Roland Bol | Harry Vereecken | Jan Vanderborght | Andrea Schnepf

Editors: Jochem Evers | Stephen P Long

Incorporating a dynamic gene-based process module into a crop simulation model

JOURNAL ARTICLE published 1 January 2021 in in silico Plants

Authors: Fabio A A Oliveira | James W Jones | Willingthon Pavan | Mehul Bhakta | C Eduardo Vallejos | Melanie J Correll | Kenneth J Boote | José M C Fernandes | Carlos A Hölbig | Gerrit Hoogenboom

Editors: Xinyou Yin

Are crop and detailed physiological models equally ‘mechanistic’ for predicting the genetic variability of whole-plant behaviour? The nexus between mechanisms and adaptive strategies

JOURNAL ARTICLE published 1 January 2020 in in silico Plants

Research funded by Australian Research Council Centre of Excellence (CE200100015) | EU projects (FP7-244374,H2020-731013) | Agence Nationale de la Recherche (ANR-10-BTBR-01,ANR-11-INBS-0012)

Authors: F Tardieu | I S C Granato | E J Van Oosterom | B Parent | G L Hammer

Editors: Vincent Vadez

On the resolution requirements for accurately representing interactions between plant canopy structure and function in three-dimensional leaf-resolving models

JOURNAL ARTICLE published 1 July 2021 in in silico Plants

Research funded by USDA NIFA (1013396)

Authors: Brian N Bailey | Eric R Kent

Editors: Przemyslaw Prusinkiewicz

A comparison of empirical and mechanistic models for wheat yield prediction at field level in Moroccan rainfed areas

JOURNAL ARTICLE published 1 January 2024 in in silico Plants

Research funded by SoilPhorLife (SoilPhorLife N◦4)

Authors: Achraf Mamassi | Marie Lang | Bernard Tychon | Mouanis Lahlou | Joost Wellens | Mohamed El Gharous | Hélène Marrou

Editors: Daniela Bustos-Korts | Stephen P Long

CRONOSOJA: a daily time-step hierarchical model predicting soybean development across maturity groups in the Southern Cone

JOURNAL ARTICLE published 9 May 2024 in in silico Plants

Authors: Alan D Severini | Santiago Álvarez-Prado | María E Otegui | Monika Kavanová | Claudia R C Vega | Sebastián Zuil | Sergio Ceretta | Martín Acreche | Fidencia Amarilla | Mariano Cicchino | María E Fernández-Long | Aníbal Crespo | Román Serrago | Daniel J Miralles

Incorporating realistic trait physiology into crop growth models to support genetic improvement

JOURNAL ARTICLE published 1 January 2021 in in silico Plants

Authors: K J Boote | J W Jones | G Hoogenboom

Editors: Karine Chenu | Stephen P Long

Gillespie-Lindenmayer systems for stochastic simulation of morphogenesis

JOURNAL ARTICLE published 1 January 2019 in in silico Plants

Authors: Mikolaj Cieslak | Przemyslaw Prusinkiewicz