Predicting Physical Interactions between Protein Complexes

JOURNAL ARTICLE published June 2013 in Molecular & Cellular Proteomics

Authors: Trevor Clancy | Einar Andreas Rødland | Ståle Nygard | Eivind Hovig

Outer Membrane Vesicles (OMV)-based and Proteomics-driven Antigen Selection Identifies Novel Factors Contributing to Bordetella pertussis Adhesion to Epithelial Cells

JOURNAL ARTICLE published February 2018 in Molecular & Cellular Proteomics

Authors: Gianmarco Gasperini | Massimiliano Biagini | Vanessa Arato | Claudia Gianfaldoni | Alessandro Vadi | Nathalie Norais | Giuliano Bensi | Isabel Delany | Mariagrazia Pizza | Beatrice Aricò | Rosanna Leuzzi

Regulation of Acetylation Restores Proteolytic Function of Diseased Myocardium in Mouse and Human

JOURNAL ARTICLE published December 2013 in Molecular & Cellular Proteomics

Authors: Ding Wang | Caiyun Fang | Nobel C. Zong | David A. Liem | Martin Cadeiras | Sarah B. Scruggs | Hongxiu Yu | Allen K. Kim | Pengyuan Yang | Mario Deng | Haojie Lu | Peipei Ping

Single Cell Immuno-Laser Microdissection Coupled to Label-Free Proteomics to Reveal the Proteotypes of Human Brain Cells After Ischemia

JOURNAL ARTICLE published January 2018 in Molecular & Cellular Proteomics

Research funded by MINECO Instituto de Salud Carlos III (ISCIII) (PI15/00354,RD16/0019/0021,PRB2-ISCIII)

Authors: Teresa García-Berrocoso | Víctor Llombart | Laura Colàs-Campàs | Alexandre Hainard | Virginie Licker | Anna Penalba | Laura Ramiro | Alba Simats | Alejandro Bustamante | Elena Martínez-Saez | Francesc Canals | Jean-Charles Sanchez | Joan Montaner

Insights into the Proteome of Gastrointestinal Stromal Tumors-Derived Exosomes Reveals New Potential Diagnostic Biomarkers

JOURNAL ARTICLE published March 2018 in Molecular & Cellular Proteomics

Research funded by National Cancer Institute (NCI) (R01 CA106588) | University of Kansas Medical Center (KUMC) (BRTP Postdoctoral Fellowship)

Authors: Safinur Atay | Daniel W. Wilkey | Mohammed Milhem | Michael Merchant | Andrew K. Godwin

Protein Components of Mitochondrial DNA Nucleoids in Higher Eukaryotes

JOURNAL ARTICLE published November 2003 in Molecular & Cellular Proteomics

Authors: Daniel F. Bogenhagen | Yousong Wang | Ellen L. Shen | Ryuji Kobayashi

High-density Peptide Arrays Help to Identify Linear Immunogenic B-cell Epitopes in Individuals Naturally Exposed to Malaria Infection

JOURNAL ARTICLE published April 2019 in Molecular & Cellular Proteomics

Research funded by Bundesministerium für Bildung und Forschung (13XP5050A,031A170A,03EK3030A) | Deutsche Forschungsgemeinschaft (HEiKA,SFB 365,Graduiertenkolleg 367)

Authors: Thomas Jaenisch | Kirsten Heiss | Nico Fischer | Carolin Geiger | F. Ralf Bischoff | Gerhard Moldenhauer | Leszek Rychlewski | Ali Sié | Boubacar Coulibaly | Peter H. Seeberger | Lucjan S. Wyrwicz | Frank Breitling | Felix F. Loeffler

Evidence for a Shared Nuclear Pore Complex Architecture That Is Conserved from the Last Common Eukaryotic Ancestor

JOURNAL ARTICLE published September 2009 in Molecular & Cellular Proteomics

Authors: Jeffrey A. DeGrasse | Kelly N. DuBois | Damien Devos | T. Nicolai Siegel | Andrej Sali | Mark C. Field | Michael P. Rout | Brian T. Chait

Reproducible and Consistent Quantification of the Saccharomyces cerevisiae Proteome by SWATH-mass spectrometry *

JOURNAL ARTICLE published March 2015 in Molecular & Cellular Proteomics

Authors: Nathalie Selevsek | Ching-Yun Chang | Ludovic C. Gillet | Pedro Navarro | Oliver M. Bernhardt | Lukas Reiter | Lin-Yang Cheng | Olga Vitek | Ruedi Aebersold

An Introduction to Advanced Targeted Acquisition Methods

JOURNAL ARTICLE published 2021 in Molecular & Cellular Proteomics

Authors: Mirjam van Bentum | Matthias Selbach

Ultra High Resolution Linear Ion Trap Orbitrap Mass Spectrometer (Orbitrap Elite) Facilitates Top Down LC MS/MS and Versatile Peptide Fragmentation Modes

JOURNAL ARTICLE published March 2012 in Molecular & Cellular Proteomics

Authors: Annette Michalski | Eugen Damoc | Oliver Lange | Eduard Denisov | Dirk Nolting | Mathias Müller | Rosa Viner | Jae Schwartz | Philip Remes | Michael Belford | Jean-Jacques Dunyach | Juergen Cox | Stevan Horning | Matthias Mann | Alexander Makarov

Quantitative Temporal Viromics of an Inducible HIV-1 Model Yields Insight to Global Host Targets and Phospho-Dynamics Associated with Protein Vpr

JOURNAL ARTICLE published August 2017 in Molecular & Cellular Proteomics

Authors: John D. Lapek | Mary K. Lewinski | Jacob M. Wozniak | John Guatelli | David J. Gonzalez

Phosphorothioate RNA Analysis by NETD Tandem Mass Spectrometry

JOURNAL ARTICLE published April 2024 in Molecular & Cellular Proteomics

Research funded by National Human Genome Research Institute (T32HG002760) | National Library of Medicine (5T15LM007359) | National Institute of General Medical Sciences (P41GM108538)

Authors: Trenton M. Peters-Clarke | Qiuwen Quan | Benton J. Anderson | William M. McGee | Emily Lohr | Alexander S. Hebert | Michael S. Westphall | Joshua J. Coon

Metabolic Flux Increases Glycoprotein Sialylation: Implications for Cell Adhesion and Cancer Metastasis

JOURNAL ARTICLE published July 2012 in Molecular & Cellular Proteomics

Authors: Ruben T. Almaraz | Yuan Tian | Rahul Bhattarcharya | Elaine Tan | Shih-Hsun Chen | Matthew R. Dallas | Li Chen | Zhen Zhang | Hui Zhang | Konstantinos Konstantopoulos | Kevin J. Yarema

Identification and Stoichiometry of Glycosylphosphatidylinositol-anchored Membrane Proteins of the Human Malaria Parasite Plasmodium falciparum

JOURNAL ARTICLE published July 2006 in Molecular & Cellular Proteomics

Authors: Paul R. Gilson | Thomas Nebl | Damjan Vukcevic | Robert L. Moritz | Tobias Sargeant | Terence P. Speed | Louis Schofield | Brendan S. Crabb

Profiling of the Tetraspanin Web of Human Colon Cancer Cells

JOURNAL ARTICLE published May 2006 in Molecular & Cellular Proteomics

Authors: François Le Naour | Magali André | Céline Greco | Martine Billard | Bernard Sordat | Jean-François Emile | François Lanza | Claude Boucheix | Eric Rubinstein

Immunoaffinity Enrichment and Mass Spectrometry Analysis of Protein Methylation

JOURNAL ARTICLE published January 2014 in Molecular & Cellular Proteomics

Authors: Ailan Guo | Hongbo Gu | Jing Zhou | Daniel Mulhern | Yi Wang | Kimberly A. Lee | Vicky Yang | Mike Aguiar | Jon Kornhauser | Xiaoying Jia | Jianmin Ren | Sean A. Beausoleil | Jeffrey C. Silva | Vidyasiri Vemulapalli | Mark T. Bedford | Michael J. Comb

Unified Workflow for the Rapid and In-Depth Characterization of Bacterial Proteomes

JOURNAL ARTICLE published August 2023 in Molecular & Cellular Proteomics

Research funded by European Proteomics Infrastructure Consortium providing access (823839)

Authors: Miriam Abele | Etienne Doll | Florian P. Bayer | Chen Meng | Nina Lomp | Klaus Neuhaus | Siegfried Scherer | Bernhard Kuster | Christina Ludwig

Numerical Compression Schemes for Proteomics Mass Spectrometry Data

JOURNAL ARTICLE published June 2014 in Molecular & Cellular Proteomics

Authors: Johan Teleman | Andrew W. Dowsey | Faviel F. Gonzalez-Galarza | Simon Perkins | Brian Pratt | Hannes L. Röst | Lars Malmström | Johan Malmström | Andrew R. Jones | Eric W. Deutsch | Fredrik Levander

Sample Preparation by Easy Extraction and Digestion (SPEED) - A Universal, Rapid, and Detergent-free Protocol for Proteomics Based on Acid Extraction

JOURNAL ARTICLE published January 2020 in Molecular & Cellular Proteomics

Authors: Joerg Doellinger | Andy Schneider | Marcell Hoeller | Peter Lasch