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Recovery of Dynamics and Function in Spiking Neural Networks with Closed-Loop Control

JOURNAL ARTICLE published 1 February 2016 in PLOS Computational Biology

Authors: Ioannis Vlachos | Taşkin Deniz | Ad Aertsen | Arvind Kumar

Editors: Olaf Sporns

Qualia: The Geometry of Integrated Information

JOURNAL ARTICLE published 14 August 2009 in PLoS Computational Biology

Authors: David Balduzzi | Giulio Tononi

Editors: Karl J. Friston

Image-based parameter inference for epithelial mechanics

JOURNAL ARTICLE published 23 June 2022 in PLOS Computational Biology

Research funded by Kakenhi (17K15125) | Kakenhi (18H01185) | JRPs with SNSF (JPJSJPR 20191501) | PRIME, AMED (20gm5810025h9904) | Core Research for Evolutional Science and Technology (JPMJCR1923)

Authors: Goshi Ogita | Takefumi Kondo | Keisuke Ikawa | Tadashi Uemura | Shuji Ishihara | Kaoru Sugimura

Editors: David M. Umulis

The preferred nucleotide contexts of the AID/APOBEC cytidine deaminases have differential effects when mutating retrotransposon and virus sequences compared to host genes

JOURNAL ARTICLE published 31 March 2017 in PLOS Computational Biology

Research funded by National Institutes of Health (1R01GM111741)

Authors: Jeffrey Chen | Thomas MacCarthy

Editors: Frederick A Matsen

Conformational ensemble of native α-synuclein in solution as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations

JOURNAL ARTICLE published 27 March 2019 in PLOS Computational Biology

Research funded by Genome Canada (204PRO and 214PRO) | Genome Canada (264PRO) | Genome British Columbia (204PRO and 214PRO) | Genome British Columbia (264PRO) | National Institutes of Health (R01GM080742, R01GM114015, R01GM064803, R01GM123247)

Authors: Nicholas I. Brodie | Konstantin I. Popov | Evgeniy V. Petrotchenko | Nikolay V. Dokholyan | Christoph H. Borchers

Editors: Guanghong Wei

Bacteria use structural imperfect mimicry to hijack the host interactome

JOURNAL ARTICLE published 4 December 2020 in PLOS Computational Biology

Authors: Natalia Sanchez de Groot | Marc Torrent Burgas

Editors: Arne Elofsson

Atomistic mechanism of transmembrane helix association

JOURNAL ARTICLE published 4 June 2020 in PLOS Computational Biology

Research funded by Wellcome Trust (WT100946AIA) | National Institutes of Health (Intramural Award)

Authors: Jan Domański | Mark S. P. Sansom | Phillip J. Stansfeld | Robert B. Best

Editors: Peter M Kasson

Modeling of the axon plasma membrane structure and its effects on protein diffusion

JOURNAL ARTICLE published 2 May 2019 in PLOS Computational Biology

Research funded by National Science Foundation Civil, Mechanical and Manufacturing Innovation CAREER Award (1354363) | The U.S. National Institutes of Health, National Institute of Neurological Disorders and Stroke (NS073981) | The U.S. National Institutes of Health, National Institute of Mental Health (MH110887)

Authors: Yihao Zhang | Anastasios V. Tzingounis | George Lykotrafitis

Editors: Avner Schlessinger

Fuzzy Logic Analysis of Kinase Pathway Crosstalk in TNF/EGF/Insulin-Induced Signaling

JOURNAL ARTICLE published 3 April 2009 in PLoS Computational Biology

Authors: Bree B. Aldridge | Julio Saez-Rodriguez | Jeremy L. Muhlich | Peter K. Sorger | Douglas A. Lauffenburger

Editors: Christopher Rao

Epithelial organ shape is generated by patterned actomyosin contractility and maintained by the extracellular matrix

JOURNAL ARTICLE published 20 August 2020 in PLOS Computational Biology

Research funded by National Science Foundation (CBET-1553826) | National Science Foundation (CBET-1553826) | National Science Foundation (DMS-1762063) | National Science Foundation (DMS-1762063) | National Science Foundation (DMS-1762063) | National Institutes of Health (UO1 HL116330) | National Institutes of Health (R35 GM124935) | National Institutes of Health (R35 GM124935)

Authors: Ali Nematbakhsh | Megan Levis | Nilay Kumar | Weitao Chen | Jeremiah J. Zartman | Mark Alber

Editors: Philip K. Maini

Mathematical model and tool to explore shorter multi-drug therapy options for active pulmonary tuberculosis

JOURNAL ARTICLE published 18 August 2020 in PLOS Computational Biology

Research funded by National Institutes of Health (R01AI106398-01) | Bill and Melinda Gates Foundation (OPP1031105)

Authors: John Fors | Natasha Strydom | William S. Fox | Ron J. Keizer | Radojka M. Savic

Editors: James Gallo

Computational Aspects of Feedback in Neural Circuits

JOURNAL ARTICLE published 19 January 2007 in PLoS Computational Biology

Authors: Wolfgang Maass | Prashant Joshi | Eduardo D Sontag

Editors: Rolf Kotter

Multiplexing information flow through dynamic signalling systems

JOURNAL ARTICLE published 3 August 2020 in PLOS Computational Biology

Research funded by Engineering and Physical Sciences Research Council (EP/P019811/1) | FP7 Ideas: European Research Council (FP7/2007- 2013) | Biotechnology and Biological Sciences Research Council (BB/K003097/1) | Biotechnology and Biological Sciences Research Council (BB/F005938/1)

Authors: Giorgos Minas | Dan J. Woodcock | Louise Ashall | Claire V. Harper | Michael R. H. White | David A. Rand

Editors: Attila Csikász-Nagy

Telling ecological networks apart by their structure: An environment-dependent approach

JOURNAL ARTICLE published 23 April 2020 in PLOS Computational Biology

Authors: Chuliang Song | Serguei Saavedra

Editors: James O’Dwyer

A Multi-scale Analysis of Influenza A Virus Fitness Trade-offs due to Temperature-dependent Virus Persistence

JOURNAL ARTICLE published 21 March 2013 in PLoS Computational Biology

Authors: Andreas Handel | Justin Brown | David Stallknecht | Pejman Rohani

Editors: Christophe Fraser

Formation of Raft-Like Assemblies within Clusters of Influenza Hemagglutinin Observed by MD Simulations

JOURNAL ARTICLE published 11 April 2013 in PLoS Computational Biology

Authors: Daniel L. Parton | Alex Tek | Marc Baaden | Mark S. P. Sansom

Editors: Helmut Grubmüller

Deep learning tools and modeling to estimate the temporal expression of cell cycle proteins from 2D still images

JOURNAL ARTICLE published 14 March 2022 in PLOS Computational Biology

Research funded by Chan Zuckerberg Initiative (2019-198009) | NCI (R50 CA211529)

Authors: Thierry Pécot | Maria C. Cuitiño | Roger H. Johnson | Cynthia Timmers | Gustavo Leone

Editors: Attila Csikász-Nagy

A Network Inference Method for Large-Scale Unsupervised Identification of Novel Drug-Drug Interactions

JOURNAL ARTICLE published 5 December 2013 in PLoS Computational Biology

Authors: Roger Guimerà | Marta Sales-Pardo

Editors: Nathan D. Price

Genetic dissection of complex traits using hierarchical biological knowledge

JOURNAL ARTICLE published 17 September 2021 in PLOS Computational Biology

Research funded by National Institutes of Health (R01 HG009979) | National Institutes of Health (P41 GM103504) | national institutes of health (P50 DA037844)

Authors: Hidenori Tanaka | Jason F. Kreisberg | Trey Ideker

Editors: Jason Flannick

PLoS Computational Biology Issue Image | Vol. 5(11) November 2009

JOURNAL ARTICLE published 26 November 2009 in PLoS Computational Biology