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Recovery of Dynamics and Function in Spiking Neural Networks with Closed-Loop Control JOURNAL ARTICLE published 1 February 2016 in PLOS Computational Biology |
Qualia: The Geometry of Integrated Information JOURNAL ARTICLE published 14 August 2009 in PLoS Computational Biology |
Image-based parameter inference for epithelial mechanics JOURNAL ARTICLE published 23 June 2022 in PLOS Computational Biology Research funded by Kakenhi (17K15125) | Kakenhi (18H01185) | JRPs with SNSF (JPJSJPR 20191501) | PRIME, AMED (20gm5810025h9904) | Core Research for Evolutional Science and Technology (JPMJCR1923) |
The preferred nucleotide contexts of the AID/APOBEC cytidine deaminases have differential effects when mutating retrotransposon and virus sequences compared to host genes JOURNAL ARTICLE published 31 March 2017 in PLOS Computational Biology Research funded by National Institutes of Health (1R01GM111741) |
Conformational ensemble of native α-synuclein in solution as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations JOURNAL ARTICLE published 27 March 2019 in PLOS Computational Biology Research funded by Genome Canada (204PRO and 214PRO) | Genome Canada (264PRO) | Genome British Columbia (204PRO and 214PRO) | Genome British Columbia (264PRO) | National Institutes of Health (R01GM080742, R01GM114015, R01GM064803, R01GM123247) |
Bacteria use structural imperfect mimicry to hijack the host interactome JOURNAL ARTICLE published 4 December 2020 in PLOS Computational Biology |
Atomistic mechanism of transmembrane helix association JOURNAL ARTICLE published 4 June 2020 in PLOS Computational Biology Research funded by Wellcome Trust (WT100946AIA) | National Institutes of Health (Intramural Award) |
Modeling of the axon plasma membrane structure and its effects on protein diffusion JOURNAL ARTICLE published 2 May 2019 in PLOS Computational Biology Research funded by National Science Foundation Civil, Mechanical and Manufacturing Innovation CAREER Award (1354363) | The U.S. National Institutes of Health, National Institute of Neurological Disorders and Stroke (NS073981) | The U.S. National Institutes of Health, National Institute of Mental Health (MH110887) |
Fuzzy Logic Analysis of Kinase Pathway Crosstalk in TNF/EGF/Insulin-Induced Signaling JOURNAL ARTICLE published 3 April 2009 in PLoS Computational Biology |
Epithelial organ shape is generated by patterned actomyosin contractility and maintained by the extracellular matrix JOURNAL ARTICLE published 20 August 2020 in PLOS Computational Biology Research funded by National Science Foundation (CBET-1553826) | National Science Foundation (CBET-1553826) | National Science Foundation (DMS-1762063) | National Science Foundation (DMS-1762063) | National Science Foundation (DMS-1762063) | National Institutes of Health (UO1 HL116330) | National Institutes of Health (R35 GM124935) | National Institutes of Health (R35 GM124935) |
Mathematical model and tool to explore shorter multi-drug therapy options for active pulmonary tuberculosis JOURNAL ARTICLE published 18 August 2020 in PLOS Computational Biology Research funded by National Institutes of Health (R01AI106398-01) | Bill and Melinda Gates Foundation (OPP1031105) |
Computational Aspects of Feedback in Neural Circuits JOURNAL ARTICLE published 19 January 2007 in PLoS Computational Biology |
Multiplexing information flow through dynamic signalling systems JOURNAL ARTICLE published 3 August 2020 in PLOS Computational Biology Research funded by Engineering and Physical Sciences Research Council (EP/P019811/1) | FP7 Ideas: European Research Council (FP7/2007- 2013) | Biotechnology and Biological Sciences Research Council (BB/K003097/1) | Biotechnology and Biological Sciences Research Council (BB/F005938/1) |
Telling ecological networks apart by their structure: An environment-dependent approach JOURNAL ARTICLE published 23 April 2020 in PLOS Computational Biology |
A Multi-scale Analysis of Influenza A Virus Fitness Trade-offs due to Temperature-dependent Virus Persistence JOURNAL ARTICLE published 21 March 2013 in PLoS Computational Biology |
Formation of Raft-Like Assemblies within Clusters of Influenza Hemagglutinin Observed by MD Simulations JOURNAL ARTICLE published 11 April 2013 in PLoS Computational Biology |
Deep learning tools and modeling to estimate the temporal expression of cell cycle proteins from 2D still images JOURNAL ARTICLE published 14 March 2022 in PLOS Computational Biology Research funded by Chan Zuckerberg Initiative (2019-198009) | NCI (R50 CA211529) |
A Network Inference Method for Large-Scale Unsupervised Identification of Novel Drug-Drug Interactions JOURNAL ARTICLE published 5 December 2013 in PLoS Computational Biology |
Genetic dissection of complex traits using hierarchical biological knowledge JOURNAL ARTICLE published 17 September 2021 in PLOS Computational Biology Research funded by National Institutes of Health (R01 HG009979) | National Institutes of Health (P41 GM103504) | national institutes of health (P50 DA037844) |
PLoS Computational Biology Issue Image | Vol. 5(11) November 2009 JOURNAL ARTICLE published 26 November 2009 in PLoS Computational Biology |