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Agreement and disagreement in pediatric functional neurological symptom disorders: Comparing patient reported outcome measures (PROMs) and clinician assessments

JOURNAL ARTICLE published December 2024 in Computational and Structural Biotechnology Journal

Authors: S. Barak | J. Landa | E. Eisenstein | M. Gerner | T. Ravid Vulkan | E. Neeman-Verblun | T. Silberg

PathExNET: A tool for extracting pathway expression networks from gene expression statistics

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: George Minadakis | Alfonso Muñoz-Pomer Fuentes | George Tsouloupas | Irene Papatheodorou | George M. Spyrou

Recursive Motif Analyses Identify Brain Epigenetic Transcription Regulatory Modules

JOURNAL ARTICLE published 2019 in Computational and Structural Biotechnology Journal

Research funded by NIH (NS094574)

Authors: Sharmi Banerjee | Xiaoran Wei | Hehuang Xie

Exploring chemical space for lead identification by propagating on chemical similarity network

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Jungseob Yi | Sangseon Lee | Sangsoo Lim | Changyun Cho | Yinhua Piao | Marie Yeo | Dongkyu Kim | Sun Kim | Sunho Lee

autoRPA: A web server for constructing cancer staging models by recursive partitioning analysis

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Research funded by Sun Yat-sen University (19ykpy184,81772614,91753137,31801105,31771462,U1611261,2017ZT07S096,2018A030313323,2020A1515011219) | National Natural Science Foundation of China (19ykpy184,81772614,91753137,31801105,31771462,U1611261,2017ZT07S096,2018A030313323,2020A1515011219) | Fundamental Research Funds for the Central Universities (19ykpy184,81772614,91753137,31801105,31771462,U1611261,2017ZT07S096,2018A030313323,2020A1515011219) | Guangdong Innovative and Entrepreneurial Research Team Program (19ykpy184,81772614,91753137,31801105,31771462,U1611261,2017ZT07S096,2018A030313323,2020A1515011219) | Applied Basic Research Foundation of Yunnan Province (19ykpy184,81772614,91753137,31801105,31771462,U1611261,2017ZT07S096,2018A030313323,2020A1515011219)

Authors: Yubin Xie | Xiaotong Luo | Huiqin Li | Qingxian Xu | Zhihao He | Qi Zhao | Zhixiang Zuo | Jian Ren

Nucleolar Essential Protein 1 (Nep1): Elucidation of enzymatic catalysis mechanism by molecular dynamics simulation and quantum mechanics study

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Mateusz Jedrzejewski | Barbara Belza | Iwona Lewandowska | Marta Sadlej | Agata P. Perlinska | Rafal Augustyniak | Thomas Christian | Ya-Ming Hou | Marcin Kalek | Joanna I. Sulkowska

Identify differential genes and cell subclusters from time-series scRNA-seq data using scTITANS

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Li Shao | Rui Xue | Xiaoyan Lu | Jie Liao | Xin Shao | Xiaohui Fan

Optimizing the Illumina COVIDSeq laboratorial and bioinformatics pipeline on thousands of samples for SARS-CoV-2 Variants of Concern tracking

JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal

Authors: Sara Donzelli | Ludovica Ciuffreda | Martina Pontone | Martina Betti | Alice Massacci | Carla Mottini | Francesca De Nicola | Giulia Orlandi | Frauke Goeman | Eugenia Giuliani | Eleonora Sperandio | Giulia Piaggio | Aldo Morrone | Gennaro Ciliberto | Maurizio Fanciulli | Giovanni Blandino | Fulvia Pimpinelli | Matteo Pallocca

Identification of (Z)-2-benzylidene-dihydroimidazothiazolone derivatives as tyrosinase inhibitors: Anti-melanogenic effects and in silico studies

JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal

Research funded by National Research Foundation of Korea (NRF-2020R1A2C1004198)

Authors: Heejeong Choi | Il Young Ryu | Inkyu Choi | Sultan Ullah | Hee Jin Jung | Yujin Park | YeJi Hwang | Yeongmu Jeong | Sojeong Hong | Pusoon Chun | Hae Young Chung | Hyung Ryong Moon

Path to normality: Assessing the level of social-distancing measures relaxation against antibody-resistant SARS-CoV-2 variants in a partially-vaccinated population

JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal

Authors: Jing-Bo Liang | Hsiang-Yu Yuan | Kin-Kit Li | Wan-In Wei | Samuel Yeung Shan Wong | Arthur Tang | Steven Riley | Kin On Kwok

Chimeric mitochondrial peptides from contiguous regular and swinger RNA

JOURNAL ARTICLE published 2016 in Computational and Structural Biotechnology Journal

Research funded by A*MIDEX project (ANR-11-IDEX-0001-02)

Authors: Hervé Seligmann

Structure and compositional analysis of aluminum oxyhydroxide adsorbed pertussis vaccine

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Jessica Duprez | Kristen Kalbfleisch | Sasmit Deshmukh | Jessie Payne | Manjit Haer | Wayne Williams | Ibrahim Durowoju | Marina Kirkitadze

Two alternative conformations of mRNA in the human ribosome during elongation and termination of translation as revealed by EPR spectroscopy

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Konstantin N. Bulygin | Ivan O. Timofeev | Alexey A. Malygin | Dmitri M. Graifer | Maria I. Meschaninova | Alya G. Venyaminova | Olesya A. Krumkacheva | Matvey V. Fedin | Ludmila Yu. Frolova | Galina G. Karpova | Elena G. Bagryanskaya

The effects of shared information on semantic calculations in the gene ontology

JOURNAL ARTICLE published 2017 in Computational and Structural Biotechnology Journal

Research funded by National Basic Research Program of China (2015CB964601,2013CB967001) | National Natural Science Foundation of China (81570828)

Authors: Paul W. Bible | Hong-Wei Sun | Maria I. Morasso | Rasiah Loganantharaj | Lai Wei

A computational analysis of transcriptional profiles from CD8(+) T lymphocytes reveals potential mechanisms of HIV/AIDS control and progression

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Sergey Ivanov | Dmitry Filimonov | Olga Tarasova

DeepScratch: Single-cell based topological metrics of scratch wound assays

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Research funded by Engineering and Physical Sciences Research Council (204724/Z/16/Z,EP/M013774/1)

Authors: Avelino Javer | Jens Rittscher | Heba Z. Sailem

Accurate prediction of RNA 5-hydroxymethylcytosine modification by utilizing novel position-specific gapped k-mer descriptors

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Sajid Ahmed | Zahid Hossain | Mahtab Uddin | Ghazaleh Taherzadeh | Alok Sharma | Swakkhar Shatabda | Abdollah Dehzangi

Abasy Atlas v2.2: The most comprehensive and up-to-date inventory of meta-curated, historical, bacterial regulatory networks, their completeness and system-level characterization

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Juan M. Escorcia-Rodríguez | Andreas Tauch | Julio A. Freyre-González

Are Circulating Type 2 Vaccine-derived Polioviruses (VDPVs) Genetically Distinguishable from Immunodeficiency-associated VDPVs?

JOURNAL ARTICLE published 2017 in Computational and Structural Biotechnology Journal

Authors: Kun Zhao | Jaume Jorba | Jing Shaw | Jane Iber | Qi Chen | Kelley Bullard | Olen M. Kew | Cara C. Burns

Interactions between soil compositions and the wheat root microbiome under drought stress: From an in silico to in planta perspective

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Jiyeon Si | Emilie Froussart | Tom Viaene | Jorge F. Vázquez-Castellanos | Kelly Hamonts | Lin Tang | Stien Beirinckx | Annick De Keyser | Tibby Deckers | Fien Amery | Steven Vandenabeele | Jeroen Raes | Sofie Goormachtig