A network-based drug prioritization and combination analysis for the MEK5/ERK5 pathway in breast cancer

JOURNAL ARTICLE published 21 February 2024 in BioData Mining

Authors: Regan Odongo | Asuman Demiroglu-Zergeroglu | Tunahan Çakır

Joint analysis of multiple high-dimensional data types using sparse matrix approximations of rank-1 with applications to ovarian and liver cancer

JOURNAL ARTICLE published December 2016 in BioData Mining

Research funded by National Cancer Institute (R01CA161209-04,R01CA161209-04) | National Cancer Institute (P30 CA071789,P30 CA071789-12S7)

Authors: Gordon Okimoto | Ashkan Zeinalzadeh | Tom Wenska | Michael Loomis | James B. Nation | Tiphaine Fabre | Maarit Tiirikainen | Brenda Hernandez | Owen Chan | Linda Wong | Sandi Kwee

ProtNN: fast and accurate protein 3D-structure classification in structural and topological space

JOURNAL ARTICLE published December 2016 in BioData Mining

Authors: Wajdi Dhifli | Abdoulaye Baniré Diallo

Prescreening and treatment of aortic dissection through an analysis of infinite-dimension data

JOURNAL ARTICLE published December 2021 in BioData Mining

Research funded by National Natural Science Foundation of China (81870346, 81701842, 81701801,81700432) | Clinical Research Program of 9th People's Hospital (JYLJ202010) | Shanghai Science and Technology Innovation Action Plan (20Y11909600) | Shanghai Municipal Health Bureau Project (202040434) | Shanghai Jiao Tong University School of Medicine Doctoral Innovation Fund (BXJ201935)

Authors: Peng Qiu | Yixuan Li | Kai Liu | Jinbao Qin | Kaichuang Ye | Tao Chen | Xinwu Lu

TSPmap, a tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps

JOURNAL ARTICLE published December 2017 in BioData Mining

Research funded by Biological and Environmental Research (SC0012459,DE-FG02-08ER64629) | National Institute of Food and Agriculture (2014-38420-21801)

Authors: J. Grey Monroe | Zachariah A. Allen | Paul Tanger | Jack L. Mullen | John T. Lovell | Brook T. Moyers | Darrell Whitley | John K. McKay

New neural network classification method for individuals ancestry prediction from SNPs data

JOURNAL ARTICLE published December 2021 in BioData Mining

Research funded by H3ABioNet (U41HG006941)

Authors: H. Soumare | S. Rezgui | N. Gmati | A. Benkahla

Iteratively refining breast cancer intrinsic subtypes in the METABRIC dataset

JOURNAL ARTICLE published December 2016 in BioData Mining

Research funded by Australian Research Council (Future Fellowship FT120100060 - ARC Discovery Project DP120102576) | Cancer Institute of New South Wales (Big Data Big Impact Grant 13/DATA/1–03)

Authors: Heloisa H. Milioli | Renato Vimieiro | Inna Tishchenko | Carlos Riveros | Regina Berretta | Pablo Moscato

Detecting gene-gene interactions using a permutation-based random forest method

JOURNAL ARTICLE published December 2016 in BioData Mining

Research funded by U.S. National Library of Medicine (LM009012,LM010098,LM011360) | National Eye Institute (EY022300) | National Institute of General Medical Sciences (GM103506,GM103534) | National Cancer Institute (CA057494) | National Institute of Environmental Health Sciences (ES0073737)

Authors: Jing Li | James D. Malley | Angeline S. Andrew | Margaret R. Karagas | Jason H. Moore

Investigating the parameter space of evolutionary algorithms

JOURNAL ARTICLE published December 2018 in BioData Mining

Research funded by National Institutes of Health (AI116794, DK112217, ES013508, HL134015, LM010098, LM011360, LM012601, and TR001263)

Authors: Moshe Sipper | Weixuan Fu | Karuna Ahuja | Jason H. Moore

Within-sample co-methylation patterns in normal tissues

JOURNAL ARTICLE published December 2019 in BioData Mining

Authors: Lillian Sun | Shuying Sun

Ten important roles for academic leaders in data science

JOURNAL ARTICLE published December 2020 in BioData Mining

Authors: Jason H. Moore

Grasping frequent subgraph mining for bioinformatics applications

JOURNAL ARTICLE published December 2018 in BioData Mining

Research funded by Fonds Wetenschappelijk Onderzoek (Evolving graph patterns)

Authors: Aida Mrzic | Pieter Meysman | Wout Bittremieux | Pieter Moris | Boris Cule | Bart Goethals | Kris Laukens

The prediction accuracy of dynamic mixed-effects models in clustered data

JOURNAL ARTICLE published December 2016 in BioData Mining

Research funded by National Heart, Lung, and Blood Institute (5F30HL115992,5R01HL066176)

Authors: Brian S. Finkelman | Benjamin French | Stephen E. Kimmel

An extended data mining method for identifying differentially expressed assay-specific signatures in functional genomic studies

JOURNAL ARTICLE published December 2010 in BioData Mining

Authors: Derrick K Rollins | AiLing Teh

Identification of SNPs associated with variola virus virulence

JOURNAL ARTICLE published December 2013 in BioData Mining

Authors: Anne Gatewood Hoen | Shea N Gardner | Jason H Moore

Logic minimization and rule extraction for identification of functional sites in molecular sequences

JOURNAL ARTICLE published December 2012 in BioData Mining

Authors: Raul Cruz-Cano | Mei-Ling Ting Lee | Ming-Ying Leung

Hypothesis exploration with visualization of variance

JOURNAL ARTICLE published December 2014 in BioData Mining

Authors: Douglass Stott Parker | Eliza Congdon | Robert M Bilder

Characterizing human genomic coevolution in locus-gene regulatory interactions

JOURNAL ARTICLE published December 2019 in BioData Mining

Research funded by U.S. National Library of Medicine (RO1-LM04127) | National Cancer Institute (U01-CA198941)

Authors: Daniel Savel | Mehmet Koyutürk

An investigation of gene-gene interactions in dose-response studies with Bayesian nonparametrics

JOURNAL ARTICLE published June 2015 in BioData Mining

Authors: Andrew L Beam | Alison A Motsinger-Reif | Jon Doyle

Machine learning classifiers provide insight into the relationship between microbial communities and bacterial vaginosis

JOURNAL ARTICLE published June 2015 in BioData Mining

Authors: Daniel Beck | James A. Foster