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Consistency enhancement of model prediction on document-level named entity recognition

JOURNAL ARTICLE published 1 June 2023 in Bioinformatics

Authors: Minbyul Jeong | Jaewoo Kang

Editors: Zhiyong Lu

https://doi.org/10.1093/bioinformatics/btad361 Actions

DREAM: an R package for druggability evaluation of human complex diseases

JOURNAL ARTICLE published 1 July 2023 in Bioinformatics

Authors: Antonio Federico | Michele Fratello | Alisa Pavel | Lena Möbus | Giusy del Giudice | Angela Serra | Dario Greco

Editors: Pier Luigi Martelli

https://doi.org/10.1093/bioinformatics/btad442 Actions

GENI-DB: a database of global events for epidemic intelligence

JOURNAL ARTICLE published 15 April 2012 in Bioinformatics

Authors: Nigel Collier | Son Doan

https://doi.org/10.1093/bioinformatics/bts099 Actions

Inter-species pathway perturbation prediction via data-driven detection of functional homology

JOURNAL ARTICLE published 15 February 2015 in Bioinformatics

Authors: Christoph Hafemeister | Roberto Romero | Erhan Bilal | Pablo Meyer | Raquel Norel | Kahn Rhrissorrakrai | Richard Bonneau | Adi L. Tarca

https://doi.org/10.1093/bioinformatics/btu570 Actions

Fast protein binding site comparisons using visual words representation

JOURNAL ARTICLE published 15 May 2012 in Bioinformatics

Authors: Bin Pang | Nan Zhao | Dmitry Korkin | Chi-Ren Shyu

https://doi.org/10.1093/bioinformatics/bts138 Actions

Estimating chain length for time delays in dynamical systems using profile likelihood

JOURNAL ARTICLE published 1 March 2020 in Bioinformatics

Research funded by DFG, German Research Foundation (390939984) | German Research Foundation (INST 35/1134-1 FUGG)

Authors: Adrian L Hauber | Raphael Engesser | Joep Vanlier | Jens Timmer

Editors: Janet Kelso

https://doi.org/10.1093/bioinformatics/btz838 Actions

Erratum

JOURNAL ARTICLE published 15 September 2005 in Bioinformatics

https://doi.org/10.1093/bioinformatics/bti622 Actions

An alignment-free model for comparison of regulatory sequences

JOURNAL ARTICLE published 1 October 2010 in Bioinformatics

Authors: Hashem Koohy | Nigel P. Dyer | John E. Reid | Georgy Koentges | Sascha Ott

https://doi.org/10.1093/bioinformatics/btq453 Actions

SysBiolPGWAS: simplifying post-GWAS analysis through the use of computational technologies and integration of diverse omics datasets

JOURNAL ARTICLE published 1 January 2023 in Bioinformatics

Research funded by National Human Genome Research Institute (U24HG006941,U2RTW010679)

Authors: Oluwadamilare Falola | Yagoub Adam | Olabode Ajayi | Judit Kumuthini | Suraju Adewale | Abayomi Mosaku | Chaimae Samtal | Glory Adebayo | Jerry Emmanuel | Milaine S S Tchamga | Udochukwu Erondu | Adebayo Nehemiah | Suraj Rasaq | Mary Ajayi | Bola Akanle | Olaleye Oladipo | Itunuoluwa Isewon | Marion Adebiyi | Jelili Oyelade | Ezekiel Adebiyi

Editors: Zhiyong Lu

https://doi.org/10.1093/bioinformatics/btac791 Actions

FASTdoop: a versatile and efficient library for the input of FASTA and FASTQ files for MapReduce Hadoop bioinformatics applications

JOURNAL ARTICLE published 15 May 2017 in Bioinformatics

Authors: Umberto Ferraro Petrillo | Gianluca Roscigno | Giuseppe Cattaneo | Raffaele Giancarlo

Editors: John Hancock

https://doi.org/10.1093/bioinformatics/btx010 Actions

Computational modelling of LY303511 and TRAIL-induced apoptosis suggests dynamic regulation of cFLIP

JOURNAL ARTICLE published 1 February 2013 in Bioinformatics

Authors: Yuan Shi | Gregory Mellier | Sinong Huang | Jacob White | Shazib Pervaiz | Lisa Tucker-Kellogg

https://doi.org/10.1093/bioinformatics/bts702 Actions

aphid: an R package for analysis with profile hidden Markov models

JOURNAL ARTICLE published 1 October 2019 in Bioinformatics

Research funded by Royal Society of New Zealand (RFT-VUW1501-PD)

Authors: Shaun P Wilkinson

Editors: John Hancock

https://doi.org/10.1093/bioinformatics/btz159 Actions

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling

JOURNAL ARTICLE published 1 March 2015 in Bioinformatics

Authors: Pavel Skums | Alexander Artyomenko | Olga Glebova | Sumathi Ramachandran | Ion Mandoiu | David S. Campo | Zoya Dimitrova | Alex Zelikovsky | Yury Khudyakov

https://doi.org/10.1093/bioinformatics/btu726 Actions

Identification of differentially methylated loci using wavelet-based functional mixed models

JOURNAL ARTICLE published 1 March 2016 in Bioinformatics

Authors: Wonyul Lee | Jeffrey S. Morris

https://doi.org/10.1093/bioinformatics/btv659 Actions

ArrayNorm: comprehensive normalization and analysis of microarray data

JOURNAL ARTICLE published 12 August 2004 in Bioinformatics

Authors: R. Pieler | F. Sanchez-Cabo | H. Hackl | G. G. Thallinger | Z. Trajanoski

https://doi.org/10.1093/bioinformatics/bth174 Actions

CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data

JOURNAL ARTICLE published 15 September 2012 in Bioinformatics

Authors: Michael D. Linderman | Zach Bjornson | Erin F. Simonds | Peng Qiu | Robert V. Bruggner | Ketaki Sheode | Teresa H. Meng | Sylvia K. Plevritis | Garry P. Nolan

https://doi.org/10.1093/bioinformatics/bts425 Actions

GS2: an efficiently computable measure of GO-based similarity of gene sets

JOURNAL ARTICLE published 1 May 2009 in Bioinformatics

Authors: Troy Ruths | Derek Ruths | Luay Nakhleh

https://doi.org/10.1093/bioinformatics/btp128 Actions

OnTheFly: a tool for automated document-based text annotation, data linking and network generation

JOURNAL ARTICLE published 1 April 2009 in Bioinformatics

Authors: Georgios A. Pavlopoulos | Evangelos Pafilis | M. Kuhn | Sean D. Hooper | Reinhard Schneider

https://doi.org/10.1093/bioinformatics/btp081 Actions

YY1 is a cis-regulator in the organoid models of high mammographic density

JOURNAL ARTICLE published 1 March 2020 in Bioinformatics

Research funded by NIH (RO1CA140663,R15CA235430,K22CA204439) | USDA NIFA (Hatch-NEV00727,Hatch-NEV00767,NIH P20 GM130459,R15 HL143496)

Authors: Qingsu Cheng | Mina Khoshdeli | Bradley S Ferguson | Kosar Jabbari | Chongzhi Zang | Bahram Parvin

Editors: Robert Murphy

https://doi.org/10.1093/bioinformatics/btz812 Actions

A powerful Bayesian meta-analysis method to integrate multiple gene set enrichment studies

JOURNAL ARTICLE published 1 April 2013 in Bioinformatics

Authors: Min Chen | Miao Zang | Xinlei Wang | Guanghua Xiao

https://doi.org/10.1093/bioinformatics/btt068 Actions
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