Systems-level computational modeling demonstrates fuel selection switching in high capacity running and low capacity running rats

JOURNAL ARTICLE published 23 February 2018 in PLOS Computational Biology

Research funded by National Institute of Diabetes and Digestive and Kidney Diseases (R01-DK095210) | National Heart, Lung, and Blood Institute (R01-HL072011) | National Heart, Lung, and Blood Institute (R00-HL121160)

Authors: Michael A. Moxley | Kalyan C. Vinnakota | Jason N. Bazil | Nathan R. Qi | Daniel A. Beard

Editors: Barbara M. Bakker

Combining Evolutionary Information and an Iterative Sampling Strategy for Accurate Protein Structure Prediction

JOURNAL ARTICLE published 29 December 2015 in PLOS Computational Biology

Authors: Tatjana Braun | Julia Koehler Leman | Oliver F. Lange

Editors: Debora S Marks

Leveraging Prior Information to Detect Causal Variants via Multi-Variant Regression

JOURNAL ARTICLE published 6 June 2013 in PLoS Computational Biology

Authors: Nanye Long | Samuel P. Dickson | Jessica M. Maia | Hee Shin Kim | Qianqian Zhu | Andrew S. Allen

Editors: Wyeth W. Wasserman

Forecasting national and regional influenza-like illness for the USA

JOURNAL ARTICLE published 23 May 2019 in PLOS Computational Biology

Research funded by Defense Threat Reduction Agency (HDTRA1-17-C-0025)

Authors: Michal Ben-Nun | Pete Riley | James Turtle | David P. Bacon | Steven Riley

Editors: Gerardo Chowell

Evolution of phenotypic fluctuation under host-parasite interactions

JOURNAL ARTICLE published 9 November 2021 in PLOS Computational Biology

Research funded by Ministry of Education, Culture, Sports, Science and Technology (17H06386) | Ministry of Education, Culture, Sports, Science and Technology (20H00123)

Authors: Naoto Nishiura | Kunihiko Kaneko

Editors: Jacopo Grilli

Correction: Practical considerations for measuring the effective reproductive number, Rt

JOURNAL ARTICLE published 8 December 2021 in PLOS Computational Biology

Authors: Katelyn M. Gostic | Lauren McGough | Edward B. Baskerville | Sam Abbott | Keya Joshi | Christine Tedijanto | Rebecca Kahn | Rene Niehus | James A. Hay | Pablo M. De Salazar | Joel Hellewell | Sophie Meakin | James D. Munday | Nikos I. Bosse | Katharine Sherrat | Robin N. Thompson | Laura F. White | Jana S. Huisman | Jérémie Scire | Sebastian Bonhoeffer | Tanja Stadler | Jacco Wallinga | Sebastian Funk | Marc Lipsitch | Sarah Cobey

Analysis of Accuracy in Pointing with Redundant Hand-held Tools: A Geometric Approach to the Uncontrolled Manifold Method

JOURNAL ARTICLE published 4 April 2013 in PLoS Computational Biology

Authors: Domenico Campolo | Ferdinan Widjaja | Hong Xu | Wei Tech Ang | Etienne Burdet

Editors: Jörn Diedrichsen

ORSO (Online Resource for Social Omics): A data-driven social network connecting scientists to genomics datasets

JOURNAL ARTICLE published 24 January 2020 in PLOS Computational Biology

Research funded by National Institute of Environmental Health Sciences (Z01 ES103312)

Authors: Christopher A. Lavender | Andrew J. Shapiro | Frank S. Day | David C. Fargo

Editors: Mihaela Pertea

Excalibur: A new ensemble method based on an optimal combination of aggregation tests for rare-variant association testing for sequencing data

JOURNAL ARTICLE published 14 September 2023 in PLOS Computational Biology

Research funded by Fonds pour la Formation à la Recherche dans l’Industrie et dans l’Agriculture (T.0026.14) | Fonds pour la Formation à la Recherche dans l’Industrie et dans l’Agriculture (T.0247.19) | Koning Boudewijnstichting (2018-J1810250-211305) | la Région wallonne dans le cadre du financement de l’axe stratégique FRFS-WELBIO (WELBIO-CR-2019C-06) | Fonds pour la Formation à la Recherche dans l’Industrie et dans l’Agriculture (31495825)

Authors: Simon Boutry | Raphaël Helaers | Tom Lenaerts | Miikka Vikkula

Editors: Aakrosh Ratan

An Entropic Mechanism of Generating Selective Ion Binding in Macromolecules

JOURNAL ARTICLE published 28 February 2013 in PLoS Computational Biology

Authors: Michael Thomas | Dylan Jayatilaka | Ben Corry

Editors: Helmut Grubmüller

Large-Scale Analysis of Network Bistability for Human Cancers

JOURNAL ARTICLE published 8 July 2010 in PLoS Computational Biology

Authors: Tetsuya Shiraishi | Shinako Matsuyama | Hiroaki Kitano

Editors: Nathan D. Price

Characterising antibody kinetics from multiple influenza infection and vaccination events in ferrets

JOURNAL ARTICLE published 19 August 2019 in PLOS Computational Biology

Research funded by Wellcome Trust (200861/Z/16/Z) | Medical Research Council (MR/R015600/1) | Medical Research Council (MR/R015600/1)

Authors: James A. Hay | Karen Laurie | Michael White | Steven Riley

Editors: Rustom Antia

A new Graph Gaussian embedding method for analyzing the effects of cognitive training

JOURNAL ARTICLE published 17 September 2020 in PLOS Computational Biology

Authors: Mengjia Xu | Zhijiang Wang | Haifeng Zhang | Dimitrios Pantazis | Huali Wang | Quanzheng Li

Editors: Cory Inman

It is theoretically possible to avoid misfolding into non-covalent lasso entanglements using small molecule drugs

JOURNAL ARTICLE published 12 March 2024 in PLOS Computational Biology

Research funded by Engineering and Physical Sciences Research Council (EP/S00923X/1) | NSF (MCB-1553291) | NIH (R35-GM124818)

Authors: Yang Jiang | Charlotte M. Deane | Garrett M. Morris | Edward P. O’Brien

Editors: Changbong Hyeon

Mechanical evolution of DNA double-strand breaks in the nucleosome

JOURNAL ARTICLE published 14 June 2018 in PLOS Computational Biology

Research funded by CINES (a0020707225)

Authors: Fabrizio Cleri | Fabio Landuzzi | Ralf Blossey

Editors: Rebecca C. Wade

Approximate distance correlation for selecting highly interrelated genes across datasets

JOURNAL ARTICLE published 9 November 2021 in PLOS Computational Biology

Research funded by National Key Research and Development Program of China (2019YFA0709501) | Strategic Priority Research Program of the Chinese Academy of Sciences (XDPB17) | Key-Area Research and Development of Guangdong Province (2020B1111190001) | National Natural Science Foundation of China (61621003) | CAS Frontier Science Research Key Project for Top Young Scientist (QYZDB-SSW-SYS008) | Shanghai Municipal Science and Technology Major Project (2017SHZDZX01)

Authors: Qunlun Shen | Shihua Zhang

Editors: Mingyao Li

Multilevel Selection in Models of Prebiotic Evolution II: A Direct Comparison of Compartmentalization and Spatial Self-Organization

JOURNAL ARTICLE published 16 October 2009 in PLoS Computational Biology

Authors: Nobuto Takeuchi | Paulien Hogeweg

Editors: Gary D. Stormo

rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison

JOURNAL ARTICLE published 19 October 2016 in PLOS Computational Biology

Authors: Lars Hahn | Chris-André Leimeister | Rachid Ounit | Stefano Lonardi | Burkhard Morgenstern

Editors: Andreas Prlic

The invasion of de-differentiating cancer cells into hierarchical tissues

JOURNAL ARTICLE published 1 July 2019 in PLOS Computational Biology

Research funded by Chinese Scholarship Council (No. 201806315038) | Fundamental Research Funding for the Central Universities in China (20720180005)

Authors: Da Zhou | Yue Luo | David Dingli | Arne Traulsen

Editors: Natalia L. Komarova

Mirrored STDP Implements Autoencoder Learning in a Network of Spiking Neurons

JOURNAL ARTICLE published 3 December 2015 in PLOS Computational Biology

Authors: Kendra S. Burbank

Editors: Lyle J. Graham