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A human endogenous retrovirus encoded protease potentially cleaves numerous cellular proteins

JOURNAL ARTICLE published December 2019 in Mobile DNA

Research funded by Deutsche Forschungsgemeinschaft (Ma2298/12-1,GR 1748/6-1,SCHI 871/8-1,SCHI 871/9-1,SCHI 871/11-1,SCHI 871/12-1,INST 39/900-1,INST 380/124-1,INST 39/766-3,RO-5694/1-1) | Universität des Saarlandes (HOMFOR) | National Institute on Aging (R21AG056840 01A1) | Eunice Kennedy Shriver National Institute of Child Health and Human Development (R21HD083915-01A1) | German-Israeli Foundation for Scientific Research and Development (I-1444-201.2/2017) | H2020 European Research Council (780730, ProteaseNter, ERC-2017-PoC)

Authors: Giuseppe Rigogliuso | Martin L. Biniossek | John L. Goodier | Bettina Mayer | Gavin C. Pereira | Oliver Schilling | Eckart Meese | Jens Mayer

Targeted identification of TE insertions in a Drosophila genome through hemi-specific PCR

JOURNAL ARTICLE published December 2017 in Mobile DNA

Research funded by Division of Environmental Biology (1457800)

Authors: Shuo Zhang | Erin S. Kelleher

NucBase, an easy to use read mapper for small RNAs

JOURNAL ARTICLE published December 2013 in Mobile DNA

Authors: Jeremy Dufourt | Pierre Pouchin | Pierre Peyret | Emilie Brasset | Chantal Vaury

Integrating transposable elements in the 3D genome

JOURNAL ARTICLE published December 2020 in Mobile DNA

Research funded by The Royal Society (UF160138) | The Royal Society (UF160222) | European Cooperation in Science and Technology (CA17139)

Authors: Alexandros Bousios | Hans-Wilhelm Nützmann | Dorothy Buck | Davide Michieletto

AluMine: alignment-free method for the discovery of polymorphic Alu element insertions

JOURNAL ARTICLE published December 2019 in Mobile DNA

Research funded by Eesti Teadusagentuur (IUT34-11) | European Regional Development Fund (No. 2014-2020.4.01.15-0012)

Authors: Tarmo Puurand | Viktoria Kukuškina | Fanny-Dhelia Pajuste | Maido Remm

Subfamily-specific differential contribution of individual monomers and the tether sequence to mouse L1 promoter activity

JOURNAL ARTICLE published December 2022 in Mobile DNA

Research funded by National Institutes of Health (R15GM131263 and R03HD099412)

Authors: Lingqi Kong | Karabi Saha | Yuchi Hu | Jada N. Tschetter | Chase E. Habben | Leanne S. Whitmore | Changfeng Yao | Xijin Ge | Ping Ye | Simon J. Newkirk | Wenfeng An

Copy number variation of ribosomal DNA and Pokey transposons in natural populations of Daphnia

JOURNAL ARTICLE published 2012 in Mobile DNA

Authors: Shannon HC Eagle | Teresa J Crease

The role of Smarcad1 in retroviral repression in mouse embryonic stem cells

JOURNAL ARTICLE published 11 March 2024 in Mobile DNA

Research funded by Israel Science Foundation (761/17,761/17,761/17,761/17)

Authors: Igor Bren | Ayellet Tal | Carmit Strauss | Sharon Schlesinger

Modular organization and reticulate evolution of the ORF1 of Jockey superfamily transposable elements

JOURNAL ARTICLE published 2014 in Mobile DNA

Authors: Cushla J Metcalfe | Didier Casane

Teleost genomic repeat landscapes in light of diversification rates and ecology

JOURNAL ARTICLE published 3 October 2023 in Mobile DNA

Research funded by Norwegian Research Council (251076,251076,222378,222378,251076,251076)

Authors: William B. Reinar | Ole K. Tørresen | Alexander J. Nederbragt | Michael Matschiner | Sissel Jentoft | Kjetill S. Jakobsen

The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata

JOURNAL ARTICLE published December 2012 in Mobile DNA

Authors: Nicole de la Chaux | Takashi Tsuchimatsu | Kentaro K Shimizu | Andreas Wagner

Diversity of P-element piRNA production among M' and Q strains and its association with P-M hybrid dysgenesis in Drosophila melanogaster

JOURNAL ARTICLE published December 2017 in Mobile DNA

Authors: Keiko Tsuji Wakisaka | Kenji Ichiyanagi | Seiko Ohno | Masanobu Itoh

Host co-factors of the retrovirus-like transposon Ty1

JOURNAL ARTICLE published 2012 in Mobile DNA

Authors: Jenni K Risler | Alison E Kenny | Ryan J Palumbo | Eric R Gamache | M. Joan Curcio

Distinct features of the piRNA pathway in somatic and germ cells: from piRNA cluster transcription to piRNA processing and amplification

JOURNAL ARTICLE published December 2014 in Mobile DNA

Authors: Emmanuelle Théron | Cynthia Dennis | Emilie Brasset | Chantal Vaury

Mobilizing diversity: transposable element insertions in genetic variation and disease

JOURNAL ARTICLE published 2010 in Mobile DNA

Authors: Kathryn A O'Donnell | Kathleen H Burns

Properties of LINE-1 proteins and repeat element expression in the context of amyotrophic lateral sclerosis

JOURNAL ARTICLE published December 2018 in Mobile DNA

Authors: Gavin C. Pereira | Laura Sanchez | Paul M. Schaughency | Alejandro Rubio-Roldán | Jungbin A. Choi | Evarist Planet | Ranjan Batra | Priscilla Turelli | Didier Trono | Lyle W. Ostrow | John Ravits | Haig H. Kazazian | Sarah J. Wheelan | Sara R. Heras | Jens Mayer | Jose Luis García-Pérez | John L. Goodier

Identification of charged amino acids required for nuclear localization of human L1 ORF1 protein

JOURNAL ARTICLE published December 2019 in Mobile DNA

Research funded by Louisiana Board of Regents (N/A,N/A) | National Institute on Aging (R01 AG057597,R21AG055387) | National Institute of Environmental Health Sciences (R21 ES027797) | The Brown Foundation (N/A)

Authors: B. T. Freeman | M. Sokolowski | A. M. Roy-Engel | M. E. Smither | V. P. Belancio

Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

JOURNAL ARTICLE published December 2018 in Mobile DNA

Research funded by European Research Council (ERC-2011-AdG 295733,ERC-Consolidator ERC-STG-2012-233764) | Università degli Studi di Padova (BIRD171214) | European Regional Development Fund (MOBTT53) | Consejería de Economía, Innovación, Ciencia y Empleo, Junta de Andalucía (CICE-FEDER-P12-CTS-2256) | Ministerio de Sanidad, Servicios Sociales e Igualdad (FIS-FEDER-PI14/02152) | European Commission (PCIN-2014-115-ERA-NET NEURON II) | Howard Hughes Medical Institute (IECS-55007420) | University of Edinburgh (Institutional Strategic Support Fund (ISFF2))

Authors: Etienne Guichard | Valentina Peona | Guidantonio Malagoli Tagliazucchi | Lucia Abitante | Evelyn Jagoda | Margherita Musella | Marco Ricci | Alejandro Rubio-Roldán | Stefania Sarno | Donata Luiselli | Davide Pettener | Cristian Taccioli | Luca Pagani | Jose Luis Garcia-Perez | Alessio Boattini

Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes

JOURNAL ARTICLE published December 2019 in Mobile DNA

Research funded by European Research Council (648321) | Région Hauts-de-France, France (MICRO2 project, Program “projet emergent”) | Fonds de la Recherche Scientifique–FNRS, Belgium (PDR-T.0206.13) | University of Liège, Belgium (SFRD-12/03) | Agence Nationale de la Recherche, France (ANR-12-JSV7-0010) | Ministère de l’Enseignement Supérieur et de la Recherche, France (CPER Climibio)

Authors: Sylvain Legrand | Thibault Caron | Florian Maumus | Sol Schvartzman | Leandro Quadrana | Eléonore Durand | Sophie Gallina | Maxime Pauwels | Clément Mazoyer | Lucie Huyghe | Vincent Colot | Marc Hanikenne | Vincent Castric

Horizontal transfer of a retrotransposon between parasitic nematodes and the common shrew

JOURNAL ARTICLE published December 2019 in Mobile DNA

Research funded by Natural Sciences and Engineering Research Council of Canada (06239-2015) | Natural Sciences and Engineering Research Council of Canada (413888-2012)

Authors: Sonja M. Dunemann | James D. Wasmuth