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Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome

JOURNAL ARTICLE published 2015 in Computational and Structural Biotechnology Journal

Research funded by CONACyT (CB-2013-223279,SALUD-2014-C01-234188)

Authors: Shirley Bikel | Alejandra Valdez-Lara | Fernanda Cornejo-Granados | Karina Rico | Samuel Canizales-Quinteros | Xavier Soberón | Luis Del Pozo-Yauner | Adrián Ochoa-Leyva

Advances in optical mapping for genomic research

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Research funded by Chinese University of Hong Kong (3110135)

Authors: Yuxuan Yuan | Claire Yik-Lok Chung | Ting-Fung Chan

Genetic factors involved in rhizosphere colonization by phytobeneficial Pseudomonas spp.

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Antoine Zboralski | Martin Filion

OrganelX web server for sub-peroxisomal and sub-mitochondrial protein localization and peroxisomal target signal detection

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Marco Anteghini | Asmaa Haja | Vitor A.P. Martins dos Santos | Lambert Schomaker | Edoardo Saccenti

Inferring composition and function of the human gut microbiome in time and space: A review of genome-scale metabolic modelling tools

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Álvaro Altamirano | Pedro A. Saa | Daniel Garrido

Artificial intelligence and deep learning: New tools for histopathological diagnosis of nonalcoholic fatty liver disease/nonalcoholic steatohepatitis

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by Japan Society for the Promotion of Science (19K20122,22K05479)

Authors: Yoshihisa Takahashi | Erdenetsogt Dungubat | Hiroyuki Kusano | Toshio Fukusato

DeepOmix: A scalable and interpretable multi-omics deep learning framework and application in cancer survival analysis

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Lianhe Zhao | Qiongye Dong | Chunlong Luo | Yang Wu | Dechao Bu | Xiaoning Qi | Yufan Luo | Yi Zhao

Computational Methods for Mapping, Assembly and Quantification for Coding and Non-coding Transcripts

JOURNAL ARTICLE published 2019 in Computational and Structural Biotechnology Journal

Research funded by National Natural Science Foundation of China (31850410463,31850410486) | Shenzhen Science and Technology Innovation Committee (JCYJ20170307110638890)

Authors: Isaac A. Babarinde | Yuhao Li | Andrew P. Hutchins

A pathway-based mutation signature to predict the clinical outcomes and response to CTLA-4 inhibitors in melanoma

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by National Natural Science Foundation of China (62072145) | Natural Science Foundation of Heilongjiang Province (LH2019C042)

Authors: Qian Wang | Xiangmei Li | Jiayue Qiu | Yalan He | Jiashuo Wu | Ji Li | Wei Liu | Junwei Han

A guide to multi-omics data collection and integration for translational medicine

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Efi Athieniti | George M. Spyrou

Protein electrostatics: From computational and structural analysis to discovery of functional fingerprints and biotechnological design

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Filippo Vascon | Matteo Gasparotto | Marta Giacomello | Laura Cendron | Elisabetta Bergantino | Francesco Filippini | Irene Righetto

Soil under stress: The importance of soil life and how it is influenced by (micro)plastic pollution

JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal

Research funded by Interreg Europe (38-2-25-18) | Fonds Wetenschappelijk Onderzoek (12S9418N)

Authors: L. Joos | C. De Tender

THE ALBUMIN-BINDING DOMAIN AS A SCAFFOLD FOR PROTEIN ENGINEERING

JOURNAL ARTICLE published March 2013 in Computational and Structural Biotechnology Journal

Authors: Johan Nilvebrant | Sophia Hober

A Review of Matched-pairs Feature Selection Methods for Gene Expression Data Analysis

JOURNAL ARTICLE published 2018 in Computational and Structural Biotechnology Journal

Research funded by National Natural Science Foundation of China (61472159,61572227) | International Cooperation and Exchanges NSFC (81320108025) | Development Project of Jilin Province of China (20160204022GX,2017C033,20180414012GH) | National Science Foundation/EPSCoR (IIA-1355423) | National Science Foundation (ACI-1548562)

Authors: Sen Liang | Anjun Ma | Sen Yang | Yan Wang | Qin Ma

HDAC2 as a target for developing anti-cancer drugs

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by Ministry of Health and Welfare (HI20C0344)

Authors: Hyein Jo | Kyeonghee Shim | Han-Ul Kim | Hyun Suk Jung | Dooil Jeoung

The current understanding of KRAS protein structure and dynamics

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Tatu Pantsar

A novel P38α MAPK activator Bruceine A exhibits potent anti-pancreatic cancer activity

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Cai Lu | Lu Fan | Peng-Fei Zhang | Wei-Wei Tao | Cheng-Bin Yang | Er-Xin Shang | Fei-Yan Chen | Chun-Tao Che | Hai-Bo Cheng | Jin-Ao Duan | Ming Zhao

Impact of crosslink heterogeneity on extracellular matrix mechanics and remodeling

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Michael Mak

Predicting the impacts of mutations on protein-ligand binding affinity based on molecular dynamics simulations and machine learning methods

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Research funded by Hong Kong Research Grants Council (11200818) | City University of Hong Kong (9610034,9610460) | Shenzhen Fundamental Research Program (JCYJ20170817095210760) | National Natural Science Foundation of China (61602309) | Guangdong Basic and Applied Basic Research Foundation (2019A1515011384) | Interdisciplinary Research Scheme of the Dean’s Research Fund (FLASS/DRF/IDS-3) | Departmental Collaborative Research Fund (MIT/DCRF-R2/18-19)

Authors: Debby D. Wang | Le Ou-Yang | Haoran Xie | Mengxu Zhu | Hong Yan

Advances in multi-omics study of biomarkers of glycolipid metabolism disorder

JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal

Authors: Xinyi Fang | Runyu Miao | Jiahua Wei | Haoran Wu | Jiaxing Tian