Bioportainer Workbench: a versatile and user-friendly system that integrates implementation, management, and use of bioinformatics resources in Docker environments

JOURNAL ARTICLE published 1 April 2019 in GigaScience

Research funded by Fundação de Amparo à Pesquisa do Estado de São Paulo (17/13197-8,17/08112-3)

Authors: Fabiano B Menegidio | David Aciole Barbosa | Rafael dos S Gonçalves | Marcio M Nishime | Daniela L Jabes | Regina Costa de Oliveira | Luiz R Nunes

Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data

JOURNAL ARTICLE published December 2013 in GigaScience

Authors: Samuel Lampa | Martin Dahlö | Pall I Olason | Jonas Hagberg | Ola Spjuth

Erratum to: Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies

JOURNAL ARTICLE published 1 July 2018 in GigaScience

Authors: Jonathan A Atkinson | Guillaume Lobet | Manuel Noll | Patrick E Meyer | Marcus Griffiths | Darren M Wells

Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis)

JOURNAL ARTICLE published 12 March 2021 in GigaScience

Research funded by Horizon 2020 Framework Programme (833,522)

Authors: Xuewen Wang | Shiyu Chen | Xiao Ma | Anna E J Yssel | Srinivasa R Chaluvadi | Matthew S Johnson | Prakash Gangashetty | Falalou Hamidou | Moussa D Sanogo | Arthur Zwaenepoel | Jason Wallace | Yves Van de Peer | Jeffrey L Bennetzen | Allen Van Deynze

A high-quality genome assembly for the endangered golden snub-nosed monkey (Rhinopithecus roxellana)

JOURNAL ARTICLE published 1 August 2019 in GigaScience

Research funded by Chinese Academy of Sciences (XDB31020302) | National Natural Science Foundation of China (31 622 053) | Department of Science and Technology of Shaanxi Prov. China (2018TD-017) | Ministry of Science and Technology of China (2016YFC0503200)

Authors: Lu Wang | Jinwei Wu | Xiaomei Liu | Dandan Di | Yuhong Liang | Yifei Feng | Suyun Zhang | Baoguo Li | Xiao-Guang Qi

GUIdock-VNC: Using a graphical desktop sharing system to provide a browser-based interface for containerized software

JOURNAL ARTICLE published 24 February 2017 in GigaScience

Authors: Varun Mittal | Ling-Hong Hung | Jayant Keswani | Daniel Kristiyanto | Sung Bong Lee | Ka Yee Yeung

A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel, Limnoperna fortunei

JOURNAL ARTICLE published 1 February 2018 in GigaScience

Authors: Marcela Uliano-Silva | Francesco Dondero | Thomas Dan Otto | Igor Costa | Nicholas Costa Barroso Lima | Juliana Alves Americo | Camila Junqueira Mazzoni | Francisco Prosdocimi | Mauro de Freitas Rebelo

Building a multi-scaled geospatial temporal ecology database from disparate data sources: fostering open science and data reuse

JOURNAL ARTICLE published December 2015 in GigaScience

Authors: Patricia A. Soranno | Edward G. Bissell | Kendra S. Cheruvelil | Samuel T. Christel | Sarah M. Collins | C. Emi Fergus | Christopher T. Filstrup | Jean-Francois Lapierre | Noah R. Lottig | Samantha K. Oliver | Caren E. Scott | Nicole J. Smith | Scott Stopyak | Shuai Yuan | Mary Tate Bremigan | John A. Downing | Corinna Gries | Emily N. Henry | Nick K. Skaff | Emily H. Stanley | Craig A. Stow | Pang-Ning Tan | Tyler Wagner | Katherine E. Webster

Genomes and demographic histories of the endangeredBretschneidera sinensis(Akaniaceae)

JOURNAL ARTICLE published 14 June 2022 in GigaScience

Research funded by Chinese Academy of Sciences (XDB31000000) | National Natural Science Foundation of China (31901074,31590821)

Authors: Han Zhang | Xin Du | Congcong Dong | Zeyu Zheng | Wenjie Mu | Mingjia Zhu | Yingbo Yang | Xiaojie Li | Hongyin Hu | Nawal Shrestha | Minjie Li | Yongzhi Yang

MBGC: Multiple Bacteria Genome Compressor

JOURNAL ARTICLE published 27 January 2022 in GigaScience

Authors: Szymon Grabowski | Tomasz M Kowalski

Modeling genotypes in their microenvironment to predict single- and multi-cellular behavior

JOURNAL ARTICLE published 1 March 2019 in GigaScience

Research funded by Cancer Research UK (CBIG:23969) | European Research Council (MICROC:772970)

Authors: Dimitrios Voukantsis | Kenneth Kahn | Martin Hadley | Rowan Wilson | Francesca M Buffa

Using optical mapping data for the improvement of vertebrate genome assemblies

JOURNAL ARTICLE published December 2015 in GigaScience

Authors: Kerstin Howe | Jonathan MD Wood

Understanding how and why the Gene Ontology and its annotations evolve: the GO within UniProt

JOURNAL ARTICLE published December 2014 in GigaScience

Authors: Rachael P Huntley | Tony Sawford | Maria J Martin | Claire O’Donovan

Whole genome sequence analysis of BT-474 using complete Genomics’ standard and long fragment read technologies

JOURNAL ARTICLE published December 2016 in GigaScience

Authors: Serban Ciotlos | Qing Mao | Rebecca Yu Zhang | Zhenyu Li | Robert Chin | Natali Gulbahce | Sophie Jia Liu | Radoje Drmanac | Brock A. Peters

Correction to: De novo genome assembly of the endangered Acer yangbiense, a plant species with extremely small populations endemic to Yunnan De novo genome assembly of the endangered Acer yangbiense, a plant species with extremely small populations endemic to Yunnan Province, China

JOURNAL ARTICLE published 1 September 2019 in GigaScience

Authors: Jing Yang | Hafiz Muhammad Wariss | Lidan Tao | Rengang Zhang | Quanzheng Yun | Peter Hollingsworth | Zhiling Dao | Guifen Luo | Huijun Guo | Yongpeng Ma | Weibang Sun

The new COST Action European Venom Network (EUVEN)—synergy and future perspectives of modern venomics

JOURNAL ARTICLE published 25 March 2021 in GigaScience

Research funded by European Cooperation in Science and Technology (CA19144) | Horizon 2020 Framework Programme (841576,845674)

Authors: Maria Vittoria Modica | Rafi Ahmad | Stuart Ainsworth | Gregor Anderluh | Agostinho Antunes | Dimitris Beis | Figen Caliskan | Mauro Dalla Serra | Sebastien Dutertre | Yehu Moran | Ayse Nalbantsoy | Naoual Oukkache | Stano Pekar | Maido Remm | Bjoern Marcus von Reumont | Yiannis Sarigiannis | Andrea Tarallo | Jan Tytgat | Eivind Andreas Baste Undheim | Yuri Utkin | Aida Verdes | Aude Violette | Giulia Zancolli

MetaLIMS, a simple open-source laboratory information management system for small metagenomic labs

JOURNAL ARTICLE published 1 June 2017 in GigaScience

Authors: Cassie Elizabeth Heinle | Nicolas Paul Eugène Gaultier | Dana Miller | Rikky Wenang Purbojati | Federico M. Lauro

Chromosomer: a reference-based genome arrangement tool for producing draft chromosome sequences

JOURNAL ARTICLE published December 2016 in GigaScience

Research funded by Ministry of Education and Science of the Russian Federation (11.G34.31.0068)

Authors: Gaik Tamazian | Pavel Dobrynin | Ksenia Krasheninnikova | Aleksey Komissarov | Klaus-Peter Koepfli | Stephen J. O’Brien

Tracking the NGS revolution: managing life science research on shared high-performance computing clusters

JOURNAL ARTICLE published 1 May 2018 in GigaScience

Authors: Martin Dahlö | Douglas G Scofield | Wesley Schaal | Ola Spjuth

Erratum to: An overview of the National COVID-19 Chest Imaging Database: data quality and cohort analysis

JOURNAL ARTICLE published 1 December 2021 in GigaScience

Authors: Dominic Cushnan | Oscar Bennett | Rosalind Berka | Ottavia Bertolli | Ashwin Chopra | Samie Dorgham | Alberto Favaro | Tara Ganepola | Mark Halling-Brown | Gergely Imreh | Joseph Jacob | Emily Jefferson | François Lemarchand | Daniel Schofield | Jeremy C Wyatt | N C C I D Collaborative