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Publisher Correction: Mathematical model of hemodynamic mechanisms and consequences of glomerular hypertension in diabetic mice JOURNAL ARTICLE published 4 March 2019 in npj Systems Biology and Applications |
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Data-driven modeling of core gene regulatory network underlying leukemogenesis in IDH mutant AML JOURNAL ARTICLE published 9 April 2024 in npj Systems Biology and Applications Research funded by U.S. Department of Health & Human Services | NIH | National Cancer Institute (P30CA034196,P30CA034196,U01CA271830,U01CA271830-03S1) | U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (R35GM128717,R35GM128717,R35GM133562) | U.S. Department of Health & Human Services | National Institutes of Health (P30CA034196,R35GM128717,P30CA034196) | U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (U01HG013175) |
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Whole-genome sequencing and gene network modules predict gemcitabine/carboplatin-induced myelosuppression in non-small cell lung cancer patients JOURNAL ARTICLE published 24 August 2020 in npj Systems Biology and Applications |
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Stochastic system identification without an a priori chosen kinetic model—exploring feasible cell regulation with piecewise linear functions JOURNAL ARTICLE published 11 April 2018 in npj Systems Biology and Applications |
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ROS networks: designs, aging, Parkinson’s disease and precision therapies JOURNAL ARTICLE published 26 October 2020 in npj Systems Biology and Applications Research funded by Fonds National de la Recherche Luxembourg (ROSIM,Luxembourg BioTech Initiative,ROSIM) | Ministero dell'Istruzione, dell'Università e della Ricerca (SYSBIO-Italian ROADMAP ESFRI Infrastructures,SYSBIO-Italian ROADMAP ESFRI Infrastructures,SYSBIO-Italian ROADMAP ESFRI Infrastructures) | Fonds De La Recherche Scientifique - FNRS (ROSIM) | EC | EC Seventh Framework Programm | FP7 Health (SYNPOL, EC-MOAN, NUCSYS, UNI-CELLSYS, ITFoM, BioSiM and EPIPredict) |
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Transcriptome analysis of clock disrupted cancer cells reveals differential alternative splicing of cancer hallmarks genes JOURNAL ARTICLE published 12 May 2022 in npj Systems Biology and Applications |
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Inference and interrogation of a coregulatory network in the context of lipid accumulation in Yarrowia lipolytica JOURNAL ARTICLE published 11 August 2017 in npj Systems Biology and Applications |
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Severe testing with high-dimensional omics data for enhancing biomedical scientific discovery JOURNAL ARTICLE published 21 October 2022 in npj Systems Biology and Applications |
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NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding JOURNAL ARTICLE published 20 October 2021 in npj Systems Biology and Applications |
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Optimization of nutrient utilization efficiency and productivity for algal cultures under light and dark cycles using genome-scale model process control JOURNAL ARTICLE published 15 March 2023 in npj Systems Biology and Applications Research funded by National Science Foundation (1332344,1804733) | U.S. Department of Energy (DE-SC0019388) |
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Improved prediction of PARP inhibitor response and identification of synergizing agents through use of a novel gene expression signature generation algorithm JOURNAL ARTICLE published 6 March 2017 in npj Systems Biology and Applications |
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Sunset Yellow protects against oxidative damage and exhibits chemoprevention in chemically induced skin cancer model JOURNAL ARTICLE published 2 March 2024 in npj Systems Biology and Applications Research funded by Bundesministerium für Bildung und Forschung (01ZX1905B,01ZX1905B) |
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Assessment of skin barrier function using skin images with topological data analysis JOURNAL ARTICLE published 18 December 2020 in npj Systems Biology and Applications Research funded by Secom Science and Technology Foundation (N/A) | Japan Agency for Medical Research and Development (JP17gm5010003, JP19gk0110043, JP18ek0410046, JP19ek0410058,JP18ek0410046, JP19ek0410058,JP18ek0410046, JP19ek0410058,JP18ek0410046, JP19ek0410058) |
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Effective dose window for containing tumor burden under tolerable level JOURNAL ARTICLE published 23 May 2023 in npj Systems Biology and Applications |
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Network inference from perturbation time course data JOURNAL ARTICLE published 1 November 2022 in npj Systems Biology and Applications |
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Agent-based modeling of the prostate tumor microenvironment uncovers spatial tumor growth constraints and immunomodulatory properties JOURNAL ARTICLE published 21 February 2024 in npj Systems Biology and Applications |
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Mapping drug-target interactions and synergy in multi-molecular therapeutics for pressure-overload cardiac hypertrophy JOURNAL ARTICLE published 15 February 2021 in npj Systems Biology and Applications |
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Network analyses based on comprehensive molecular interaction maps reveal robust control structures in yeast stress response pathways JOURNAL ARTICLE published 7 January 2016 in npj Systems Biology and Applications |
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Executable models of immune signaling pathways in HIV-associated atherosclerosis JOURNAL ARTICLE published 21 September 2022 in npj Systems Biology and Applications Research funded by U.S. Department of Health & Human Services | National Institutes of Health (UM1 AI069511,P30 AI078498,R01 AI134058,R01 HL160229,R01 AI134058,T32 GM07356,R01 HL123346,R01 HL123346,R01 HL128155,R01 NS066801,R01 HL123346,R01 HL128155,R01 NS066801,R01 HL160229) |
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Knowledge-based mechanistic modeling accurately predicts disease progression with gefitinib in EGFR-mutant lung adenocarcinoma JOURNAL ARTICLE published 31 July 2023 in npj Systems Biology and Applications |