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Genetic variation in fitness within a clonal population of a plant RNA virus

JOURNAL ARTICLE published January 2016 in Virus Evolution

Authors: Héctor Cervera | Santiago F. Elena

Identifying predictors of time-inhomogeneous viral evolutionary processes

JOURNAL ARTICLE published July 2016 in Virus Evolution

Authors: Filip Bielejec | Guy Baele | Allen G. Rodrigo | Marc A. Suchard | Philippe Lemey

Sendai virus intra-host population dynamics and host immunocompetence influence viral virulence duringin vivopassage

JOURNAL ARTICLE published January 2016 in Virus Evolution

Authors: José Peña | Haiyin Chen-Harris | Jonathan E. Allen | Mona Hwang | Maher Elsheikh | Shalini Mabery | Helle Bielefeldt-Ohmann | Adam T. Zemla | Richard A. Bowen | Monica K. Borucki

A single early introduction governed viral diversity in the second wave of SARS-CoV-2 epidemic in Hungary

JOURNAL ARTICLE published 8 August 2022 in Virus Evolution

Research funded by H2020 European Institute of Innovation and Technology (739593) | Nemzeti Kutatási Fejlesztési és Innovációs Hivatal (KKP-129877) | Nemzeti Kutatási Fejlesztési és Innovációs Hivatal (NKFIH-871-3/2020) | Nemzeti Kutatási Fejlesztési és Innovációs Hivatal (PD-131839) | Nemzeti Kutatási Fejlesztési és Innovációs Hivatal (RRF-2.3.1-21-2022-00006) | Nemzeti Kutatási Fejlesztési és Innovációs Hivatal (RRF-2.3.1-21-2022-00010) | Nemzeti Kutatási Fejlesztési és Innovációs Hivatal (“Frontline” KKP-129814) | Hungarian Ministry of Human Capacities (UNKP-20-5-SZTE-654) | Hungarian Ministry of Human Capacities (UNKP-21-5-SZTE-579) | Magyar Tudományos Akadémia (János Bolyai Research Fellowship BO/352/20)

Authors: Eszter Ari | Bálint Márk Vásárhelyi | Gábor Kemenesi | Gábor Endre Tóth | Brigitta Zana | Balázs Somogyi | Zsófia Lanszki | Gergely Röst | Ferenc Jakab | Balázs Papp | Bálint Kintses

A5 Phylogenetic characterization of HIV transmission in Belgium between 2013 and 2015

JOURNAL ARTICLE published 1 April 2018 in Virus Evolution

Authors: Kenny Dauwe | on behalf of all Belgian AIDS Reference Laboratories

A21 HIV-1 sub-subtype F1 outbreak among MSM in Belgium

JOURNAL ARTICLE published March 2017 in Virus Evolution

Authors: L. Vinken | K. Fransen | A.C. Pineda-Peña | I. Alexiev | C. Balotta | L. Debaisieux | C. Devaux | S. García Ribas | P. Gomes | F. Incardona | R Kaiser | J. Ruelle | M. Sayan | S. Paraschiv | R. Paredes | M. Peeters | A. Sonnerborg | E. Vancutsem | S. Van den Wijngaert | M. Van Ranst | C. Verhofstede | A.-M. Vandamme | P. Lemey | K. Van Laethem

A new perspective on the evolution and diversity of the genus Amdoparvovirus (family Parvoviridae) through genetic characterization, structural homology modeling, and phylogenetics

JOURNAL ARTICLE published 29 June 2022 in Virus Evolution

Research funded by NIH (P41-GM103311)

Authors: Marta Canuti | Judit J Pénzes | Andrew S Lang

Unexpected differences in the population genetics of phasmavirids (Bunyavirales) from subarctic ponds

JOURNAL ARTICLE published January 2017 in Virus Evolution

Research funded by National Science Foundation (ARC 1023334)

Authors: Matthew J. Ballinger | Andrew S. Medeiros | Jie Qin | Derek J. Taylor

A novel and diverse family of filamentous DNA viruses associated with parasitic wasps

JOURNAL ARTICLE published 10 April 2024 in Virus Evolution

Research funded by USDA-ARS Cooperative Agreement (8042-22000-291-04-S) | Agence Nationale de la Recherche (ANR 11-JSV7-0011 Viromics ANR-12-ADAP-0001 ANR17-CE32-0015-02) | FR-BioEnvis (LOWINSEQ) | USDA-ARS Cooperative Agreement (8042-22000-291-04-S) | Agence Nationale de la Recherche (ANR 11-JSV7-0011 Viromics ANR-12-ADAP-0001 ANR17-CE32-0015-02) | FR-BioEnvis (LOWINSEQ)

Authors: Benjamin Guinet | Matthieu Leobold | Elisabeth A Herniou | Pierrick Bloin | Nelly Burlet | Justin Bredlau | Vincent Navratil | Marc Ravallec | Rustem Uzbekov | Karen Kester | Dawn Gundersen Rindal | Jean-Michel Drezen | Julien Varaldi | Annie Bézier

A48 Inference of biological functionality in individual genomic secondary structural elements found within capulavirus genomes

JOURNAL ARTICLE published March 2017 in Virus Evolution

Authors: P. Hartnady | D. Martin | B. Muhire | P. Roumagnac

A61 Large RNA genomes: Is RNA polymerase fidelity enough?

JOURNAL ARTICLE published 1 August 2019 in Virus Evolution

Authors: F Ferron | B Canard

Inference of Japanese encephalitis virus ecological and evolutionary dynamics from passive and active virus surveillance

JOURNAL ARTICLE published January 2016 in Virus Evolution

Authors: Truc T. Pham | Shengli Meng | Yan Sun | Wenli Lv | Justin Bahl

Rising prevalence of non-B HIV-1 subtypes in North Carolina and evidence for local onward transmission

JOURNAL ARTICLE published January 2017 in Virus Evolution

Authors: Ann M. Dennis | Stephane Hué | Emily Learner | Joseph Sebastian | William C. Miller | Joseph J. Eron

Computational multigene interactions in virus growth and infection spread

JOURNAL ARTICLE published 16 January 2024 in Virus Evolution

Research funded by US National Science Foundation (DMS-2151959) | National Institutes of Health (OT2OD030524) | US National Science Foundation (DMS-2151959) | National Institutes of Health (OT2OD030524)

Authors: Bradley Schwab | John Yin

A27 Exploring novel mechanisms of HIV-2 mutagenesis

JOURNAL ARTICLE published 1 April 2018 in Virus Evolution

Authors: M E Meissner | S Baliga | M Roth | J Baller | L M Mansky

A68 Characterization and comparative genomic analysis of two Bacillus megaterium lytic bacteriophages

JOURNAL ARTICLE published 1 August 2019 in Virus Evolution

Authors: A Sharaf | M Oborník | A Hammad | S El-Afifi | E Marei

A56 Evolutionary analyses of foot-and-mouth disease virus in Southeast Asia using whole-genome sequences

JOURNAL ARTICLE published 1 April 2018 in Virus Evolution

Authors: Barbara Brito | Steven J Pauszek | Ethan J Hartwig | George R Smoliga | Le T Vu | Pham P Vu | Carolina Stenfeldt | Luis L Rodriguez | Donald P King | Nick J Knowles | Kasia Bachanek-Bankowska | Ngo T Long | H Dung | Jonathan Arzt

Identifying high-confidence variants in human cytomegalovirus genomes sequenced from clinical samples

JOURNAL ARTICLE published 20 October 2022 in Virus Evolution

Research funded by Medical Research Council (MC_UU_12014/3) | Wellcome Trust (204870/Z/16/Z)

Authors: Salvatore Camiolo | Joseph Hughes | Fausto Baldanti | Milena Furione | Daniele Lilleri | Giuseppina Lombardi | Micol Angelini | Giuseppe Gerna | Maurizio Zavattoni | Andrew J Davison | Nicolás M Suárez

A28 Frequent co-infection among human group a rotaviruses in Thailand

JOURNAL ARTICLE published March 2017 in Virus Evolution

Authors: M.A. Rabaa | T.T.N. Dung | P.T. Duy | L. Bodhidatta | B. Swierczewski | O.M. Sessions | C.J. Mason | S. Baker

A17 Transmitted drug-resistant mutations among recently infected HIV-1 patients in Israel, 2000–2014

JOURNAL ARTICLE published 1 April 2018 in Virus Evolution

Authors: Roy Moscona | Daniela Ram | Marina Wax | Efrat Bucris | Itzchak Levy | Ella Mendelson | Orna Mor