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Introduction and adaptation of an emerging pathogen to olive trees in Italy JOURNAL ARTICLE published 24 December 2021 in Microbial Genomics Research funded by h2020 marie skłodowska-curie actions (707013) | horizon 2020 (727987) |
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The intra-host evolutionary landscape and pathoadaptation of persistent Staphylococcus aureus in chronic rhinosinusitis JOURNAL ARTICLE published 27 November 2023 in Microbial Genomics Research funded by National Health and Medical Research Council (APP1196832) |
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Development of a novel streamlined workflow (AACRE) and database (inCREDBle) for genomic analysis of carbapenem-resistant Enterobacterales JOURNAL ARTICLE published 27 November 2023 in Microbial Genomics |
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A genomic view of experimental intraspecies and interspecies transformation of a rifampicin-resistance allele into Neisseria meningitidis JOURNAL ARTICLE published 1 November 2018 in Microbial Genomics |
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Phylogeography and resistome of pneumococcal meningitis in West Africa before and after vaccine introduction JOURNAL ARTICLE published 28 July 2021 in Microbial Genomics Research funded by Bill and Melinda Gates Foundation (OPP1034556) |
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Corrigendum: Genomic evolution and local epidemiology of Klebsiella pneumoniae from a major hospital in Beijing, China, over a 15 year period: dissemination of known and novel high-risk clones JOURNAL ARTICLE published 31 August 2021 in Microbial Genomics |
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Duplication and diversification of a unique chromosomal virulence island hosting the subtilase cytotoxin in Escherichia coli ST58 JOURNAL ARTICLE published 1 June 2020 in Microbial Genomics |
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Whole genome sequence analysis of ESBL-producing Escherichia coli recovered from New Zealand freshwater sites JOURNAL ARTICLE published 31 October 2022 in Microbial Genomics Research funded by AgResearch (N/A) |
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Dairy streptococcal cell wall and exopolysaccharide genome diversity JOURNAL ARTICLE published 26 April 2022 in Microbial Genomics Research funded by Science Foundation Ireland (15/SIRG/3430) | Science Foundation Ireland (13/IA/1953) |
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Prophages encoding human immune evasion cluster genes are enriched in Staphylococcus aureus isolated from chronic rhinosinusitis patients with nasal polyps JOURNAL ARTICLE published 24 December 2021 in Microbial Genomics |
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Whole genome sequencing reveals large deletions and other loss of function mutations in Mycobacterium tuberculosis drug resistance genes JOURNAL ARTICLE published 24 December 2021 in Microbial Genomics Research funded by bloomsbury set (BSA33) | medical research council (MR/M01360X/1) | medical research council (MR/N010469/1) | medical research council (MR/R025576/1) | medical research council (MR/R020973/1) | biotechnology and biological sciences research council (BB/R013063/1) | medical research council (MR/M01360X/1) | medical research council (MR/R025576/1) | medical research council (MR/R020973/1) |
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Occurrence of genes encoding spore germination in Clostridium species that cause meat spoilage JOURNAL ARTICLE published 23 February 2022 in Microbial Genomics Research funded by AgResearch (A25980) |
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Genome editing reveals that pSCL4 is required for chromosome linearity in Streptomyces clavuligerus JOURNAL ARTICLE published 30 November 2021 in Microbial Genomics Research funded by Biotechnology and Biological Sciences Research Council (BBS/E/J/000PR9790) | Biotechnology and Biological Sciences Research Council (BB/N02351X/1) | Biotechnology and Biological Sciences Research Council (BB/N023536/1) |
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Shooting hoops: globetrotting plasmids spreading more than just antimicrobial resistance genes across One Health JOURNAL ARTICLE published 23 August 2022 in Microbial Genomics Research funded by Alltech (ALMU_1) |
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Contrasting long-term dynamics of antimicrobial resistance and virulence plasmids in Salmonella Typhimurium from animals JOURNAL ARTICLE published 23 August 2022 in Microbial Genomics Research funded by Food Standards Agency (BB/R012504/1 and BBS/E/F/000PR10348) | Department for Environment, Food and Rural Affairs (RDOZO347) | Wellcome Trust (206194) |
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Comparative genome analysis of Erysipelothrix rhusiopathiae isolated from domestic pigs and wild boars suggests host adaptation and selective pressure from the use of antibiotics JOURNAL ARTICLE published 1 August 2020 in Microbial Genomics Research funded by Animal Health and Welfare ERA-Net (221-2015-1895, 5192-00004B) |
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ShigaPass: an in silico tool predicting Shigella serotypes from whole-genome sequencing assemblies JOURNAL ARTICLE published 23 March 2023 in Microbial Genomics |
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Subtelomeres are fast-evolving regions of the Streptomyces linear chromosome JOURNAL ARTICLE published 24 March 2021 in Microbial Genomics Research funded by Agence Nationale de la Recherche (ANR-11-LABX-0002-01) |
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Identification of genes required for the fitness of Streptococcus equi subsp. equi in whole equine blood and hydrogen peroxide JOURNAL ARTICLE published 1 April 2020 in Microbial Genomics Research funded by Horse Trust (G4104) | Biotechnology and Biological Sciences Research Counci (1503883) | Australian Research Council Discovery Early Career Research Award (DE180100929) |
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Genomic analyses of Staphylococcus aureus clonal complex 45 isolates does not distinguish nasal carriage from bacteraemia JOURNAL ARTICLE published 1 August 2020 in Microbial Genomics |