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Ectomycorrhizal fungi alter soil food webs and the functional potential of bacterial communities JOURNAL ARTICLE published 8 May 2024 in mSystems Research funded by National Science Foundation (2109481) | National Science Foundation (2011020) | National Science Foundation (1845544) |
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More Than Just a Spearhead: Diverse Functions of PAAR for Assembly and Delivery of Toxins of the Contractile Injection Systems JOURNAL ARTICLE published 21 December 2021 in mSystems Research funded by MOST | National Key Research and Development Program of China (2020YFA0907200) | National Natural Science Foundation of China (31770082) | National Natural Science Foundation of China (32030001) |
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Correction for Anderson et al., “Building Natural Product Libraries Using Quantitative Clade-Based and Chemical Clustering Strategies” JOURNAL ARTICLE published 21 December 2021 in mSystems |
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Quantifying Microbial Activity In Situ : the Link between Cells and Cycles JOURNAL ARTICLE published 31 August 2021 in mSystems Research funded by NASA | NASA Astrobiology Institute (80NSSC18K1301) | National Science Foundation (1634297) | Simons Foundation (507798) |
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In vitro and ex vivo proteomics of Mycobacterium marinum biofilms and the development of biofilm-binding synthetic nanobodies JOURNAL ARTICLE published 29 June 2023 in mSystems Research funded by Academy of Finland (338624) | Academy of Finland (326674, 322010, 326584, 348968) | Research Council of Norway INFRASTRUKTUR-programme (295910) |
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A Call to Action: the Need for Standardization in Developing Open-Source Mass Spectrometry-Based Methods for Microbial Subspecies Discrimination JOURNAL ARTICLE published 11 February 2020 in mSystems Research funded by HHS | National Institutes of Health (R01 GM125943,F31 AT010419,D43 TW010530) | National Science Foundation (MCB 1817955) |
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Exploring the Evolution of Virulence Factors through Bioinformatic Data Mining JOURNAL ARTICLE published 25 June 2019 in mSystems |
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Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities” JOURNAL ARTICLE published 29 June 2021 in mSystems |
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Metabolic Network Models of the Gardnerella Pangenome Identify Key Interactions with the Vaginal Environment JOURNAL ARTICLE published 23 February 2023 in mSystems Research funded by HHS | NIH | National Center for Complementary and Integrative Health (R01AI154242) | HHS | NIH | National Institute of General Medical Sciences (5T32GM136615-03) | National Science Foundation (1842490) |
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Cervicovaginal DNA Virome Alterations Are Associated with Genital Inflammation and Microbiota Composition JOURNAL ARTICLE published 26 April 2022 in mSystems Research funded by HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (R00DK107923) | HHS | NIH | Eunice Kennedy Shriver National Institute of Child Health and Human Development (R01HD092311) | Flinn Foundation (Grant# 2244) |
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Representative Diatom and Coccolithophore Species Exhibit Divergent Responses throughout Simulated Upwelling Cycles JOURNAL ARTICLE published 27 April 2021 in mSystems Research funded by National Science Foundation (DGE-1650112,DGE-1650116) | National Science Foundation (OCE-1751805) | National Science Foundation (ICER-1600506) | Phycological Society of America (GIAR) |
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Bacteria-Stimulated Metamorphosis: an Ocean of Insights from Investigating a Transient Host-Microbe Interaction JOURNAL ARTICLE published 31 August 2021 in mSystems Research funded by DOD | US Navy | Office of Naval Research (N00014-17-1-2677,N00014-20-1-2120) | Gordon and Betty Moore Foundation (GBMF9344) | National Science Foundation (1942251) |
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High-Throughput Recovery and Characterization of Metagenome-Derived Glycoside Hydrolase-Containing Clones as a Resource for Biocatalyst Development JOURNAL ARTICLE published 27 August 2019 in mSystems Research funded by Gouvernement du Canada | Natural Sciences and Engineering Research Council of Canada (82551) |
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Catching SARS-CoV-2 by Sequence Hybridization: a Comparative Analysis JOURNAL ARTICLE published 31 August 2021 in mSystems Research funded by Bundesministerium für Bildung und Forschung (01KI1905A) |
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Sepsis-Induced Gut Dysbiosis Mediates the Susceptibility to Sepsis-Associated Encephalopathy in Mice JOURNAL ARTICLE published 28 June 2022 in mSystems Research funded by Science and Technology Program of Guangzhou City (201803010058) | Maoming Science and Technology Project (2020255) | Guangdong Province High-level Hospital Construction Project of Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciencesl (DFJH2020028) |
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Quantifying the Evolutionary Constraints and Potential of Hepatitis C Virus NS5A Protein JOURNAL ARTICLE published 27 April 2021 in mSystems |
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Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs JOURNAL ARTICLE published 21 December 2021 in mSystems Research funded by County of San Diego Health and Human Services Agency (563236) | Burroughs Wellcome Fund (Career Award for Medical Scientists) | HHS | National Institutes of Health (K08AI130381) | HHS | National Institutes of Health (K01MH112436) |
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Comprehensive Scanning of Prophages in Lactobacillus : Distribution, Diversity, Antibiotic Resistance Genes, and Linkages with CRISPR-Cas Systems JOURNAL ARTICLE published 29 June 2021 in mSystems Research funded by 111project (BP0719028) | National First-class discipline program of Food Science and Technology (JUFSTR20180102) | MOE | Fundamental Research Funds for the Central Universities (JUSRP51903B) | National Natural Science Foundation of China (31820103010) |
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Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment JOURNAL ARTICLE published 27 June 2017 in mSystems Research funded by HHS | National Institutes of Health (U01-HG004866-02) | University of Arizona (Technology and Research Initiation Fund) |
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Genomic, Transcriptomic, and Phenotypic Analyses of Neisseria meningitidis Isolates from Disease Patients and Their Household Contacts JOURNAL ARTICLE published 26 December 2017 in mSystems Research funded by Marsden Fast Start Grant (ESR0901) | New Zealand Lottery Health Translational Research Project grant (353053) |