The genome sequence of a sawfly, Macrophya alboannulata (Costa, 1859)

JOURNAL ARTICLE published 12 February 2024 in Wellcome Open Research

Research funded by Wellcome Trust (218328,206194)

Authors: Steven Falk | Andrew Green | University of Oxford and Wytham Woods Genome Acquisition Lab | Darwin Tree of Life Barcoding collective | Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team | Wellcome Sanger Institute Scientific Operations: Sequencing Operations | Wellcome Sanger Institute Tree of Life Core Informatics team | Tree of Life Core Informatics collective | Darwin Tree of Life Consortium

Estimating the number of undetected COVID-19 cases among travellers from mainland China

JOURNAL ARTICLE published 6 December 2021 in Wellcome Open Research

Research funded by Medical Research Council (MR/R015600/1) | Department for International Development, UK Government (MR/R015600/1) | European and Developing Countries Clinical Trials Partnership (MR/R015600/1) | National Institute for Health Research (HPRU-2012–10080) | Wellcome Trust (200861)

Authors: Sangeeta Bhatia | Natsuko Imai | Gina Cuomo-Dannenburg | Marc Baguelin | Adhiratha Boonyasiri | Anne Cori | Zulma Cucunubá | Ilaria Dorigatti | Rich FitzJohn | Han Fu | Katy Gaythorpe | Azra Ghani | Arran Hamlet | Wes Hinsley | Daniel Laydon | Gemma Nedjati-Gilani | Lucy Okell | Steven Riley | Hayley Thompson | Sabine van Elsland | Erik Volz | Haowei Wang | Yuanrong Wang | Charles Whittaker | Xiaoyue Xi | Christl A. Donnelly | Neil M. Ferguson

Genomic and transcriptomic comparisons of closely related malaria parasites differing in virulence and sequestration pattern

JOURNAL ARTICLE published 6 December 2018 in Wellcome Open Research

Research funded by Medical Research Council (FC001101) | Cancer Research UK (FC001101) | Wellcome Trust (098051,FC001101,102907)

Authors: Jing-wen Lin | Adam J. Reid | Deirdre Cunningham | Ulrike Böhme | Irene Tumwine | Sara Keller-Mclaughlin | Mandy Sanders | Matthew Berriman | Jean Langhorne

Effects of vitamin D deficiency on neurobehavioural outcomes in children: a systematic review

JOURNAL ARTICLE published 11 June 2020 in Wellcome Open Research

Research funded by African Academy of Sciences (DEL-15-003) | Wellcome Trust (107769) | Wellcome Trust (203077) | Wellcome Trust (079110) | Wellcome Trust (064693) | Wellcome Trust (110255) | Wellcome Trust (209640) | Wellcome Trust (202800) | Wellcome Trust (095778) | Medical Research Council (MR/M025454/1)

Authors: Agnes M. Mutua | Reagan M. Mogire | Alison M. Elliott | Thomas N. Williams | Emily L. Webb | Amina Abubakar | Sarah H. Atkinson

Management of intracranial tuberculous mass lesions: how long should we treat for?

JOURNAL ARTICLE published 26 February 2020 in Wellcome Open Research

Research funded by Department of Science and Technology, Republic of South Africa (64787) | Fogarty International Center (R21TW011035) | South African Medical Research Council (SAMRC-RFA-CC:TB/HIV/AIDS-01-2014) | Wellcome Trust (098316,203135,097254) | National Institutes of Health (K23 NS084054-01, R21TW011035) | National Research Foundation, South Africa (85858, 64787)

Authors: Suzaan Marais | Ronald Van Toorn | Felicia C. Chow | Abi Manesh | Omar K. Siddiqi | Anthony Figaji | Johan F. Schoeman | Graeme Meintjes | Tuberculous Meningitis International Research Consortium

Measuring the effects of exercise in neuromuscular disorders: a systematic review and meta-analyses

JOURNAL ARTICLE published 4 May 2020 in Wellcome Open Research

Research funded by Wellcome Trust (203105)

Authors: Renae J. Stefanetti | Alasdair Blain | Cecilia Jimenez-Moreno | Linda Errington | Yi Shiau Ng | Robert McFarland | Doug M. Turnbull | Jane Newman | Gráinne S Gorman

The genome sequence of the tree wasp, Dolichovespula sylvestris Scopoli, 1763

JOURNAL ARTICLE published 28 March 2022 in Wellcome Open Research

Research funded by Wellcome Trust (206194) | Wellcome Trust (218328)

Authors: Steven Falk | Gavin R. Broad | Darwin Tree of Life Barcoding collective | Wellcome Sanger Institute Tree of Life programme | Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective | Tree of Life Core Informatics collective | Darwin Tree of Life Consortium

Understanding hospital antimicrobial prescribing decisions and determinants of uptake of new local antimicrobial prescribing guidelines in the Laos

JOURNAL ARTICLE published 11 April 2024 in Wellcome Open Research

Research funded by Wellcome Trust (214207/Z/18/Z)

Authors: Vilada Chansamouth | Anousone Douangnouvong | Peeyanout Thammavongsa | Xaysana Sombandith | Sommay Keomany | Sommana Rattana | Paul N Newton | Nicholas PJ Day | Paul Turner | Mayfong Mayxay | H. Rogier van Doorn | Elizabeth A Ashley

The genome sequence of the small forest hoverfly, Chalcosyrphus nemorum (Fabricius, 1805)

JOURNAL ARTICLE published 12 February 2024 in Wellcome Open Research

Research funded by Wellcome Trust (206194,218328)

Authors: Liam M. Crowley | Oliver Poole | University of Oxford and Wytham Woods Genome Acquisition Lab | Darwin Tree of Life Barcoding collective | Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team | Wellcome Sanger Institute Scientific Operations: Sequencing Operations | Wellcome Sanger Institute Tree of Life Core Informatics team | Tree of Life Core Informatics collective | Darwin Tree of Life Consortium

Riboseq-flow: A streamlined, reliable pipeline for ribosome profiling data analysis and quality control

JOURNAL ARTICLE published 11 April 2024 in Wellcome Open Research

Research funded by Medical Research Council (RE21605) | Wellcome Trust (CC0102) | Wellcome Trust (CC0102,215593,CC0102,CC0102)

Authors: Ira A. Iosub | Oscar G. Wilkins | Jernej Ule

Reverse transcription PCR to detect low density malaria infections

JOURNAL ARTICLE published 22 February 2021 in Wellcome Open Research

Research funded by Wellcome Trust (WT101148MA) | National University Health System (NUHSRO/2018/006/SU/01,NUHSRO/2018/094/T1) | New Zealand HRC eASIA (17/678)

Authors: Peter Christensen | Zbynek Bozdech | Wanitda Watthanaworawit | Laurent Renia | Benoit Malleret | Clare Ling | Francois Nosten

Impact of COVID-19 on non-COVID intensive care unit service utilization, case mix and outcomes: A registry-based analysis from India

JOURNAL ARTICLE published 18 June 2021 in Wellcome Open Research

Research funded by Wellcome Trust (215522)

Authors: Indian Registry of IntenSive care (IRIS) | Neill KJ Adhikari | Abi Beane | Dedeepiya Devaprasad | Robert Fowler | Rashan Haniffa | Augustian James | Devachandran Jayakumar | Chamira Kodippily | Rohit Aravindakshan Kooloth | Rakesh Laxmappa | Kishore Mangal | Ashwin Mani | Meghena Mathew | Vrindha Pari | Sristi Patodia | Rajyabardhan Pattnaik | Dilanthi Priyadarshini | Mathew Pulicken | Ebenezer Rabindrarajan | Pratheema Ramachandran | Kavita Ramesh | Usha Rani | Ananth Ramaiyan | Nagarajan Ramakrishnan | Lakshmi Ranganathan | Aasiyah Rashan | Raymond Dominic Savio | Jaganathan Selva | Bharath Kumar Tirupakuzhi Vijayaraghavan | Swagata Tripathy | Ishara Udayanga | Ramesh Venkataraman

Genome-wide CRISPR screening identifies new regulators of glycoprotein secretion

JOURNAL ARTICLE published 9 August 2019 in Wellcome Open Research

Research funded by Medical Research Council (MRC_MC_UU_12012/5) | Wellcome Trust (100574) | Wellcome Trust (109152)

Authors: Stephanie Popa | Julien Villeneuve | Sarah Stewart | Esther Perez Garcia | Anna Petrunkina Harrison | Kevin Moreau

Mapping targets for small nucleolar RNAs in yeast

JOURNAL ARTICLE published 22 November 2018 in Wellcome Open Research

Research funded by Biotechnology and Biological Sciences Research Council (Bb/L020416/1) | Wellcome Trust (109916,203149,102311)

Authors: Tatiana Dudnakova | Hywel Dunn-Davies | Rosie Peters | David Tollervey

Inferring the number of COVID-19 cases from recently reported deaths

JOURNAL ARTICLE published 27 April 2020 in Wellcome Open Research

Research funded by Department of Health & Social Care (UKPublicHealthRapidSupportTeam) | Economic and Social Research Council (ES/P010873/1) | Department for International Development, UK Government (ResearchforHealthinHumanitarianCrises) | National Institute for Health Research (16/137/109) | Research Councils UK (ES/P010873/1) | Wellcome Trust (208812,206250) | Health Data Research UK (MR/S003975/1) | Bill and Melinda Gates Foundation (INV-003174) | Wellcome Trust (210758)

Authors: Thibaut Jombart | Kevin van Zandvoort | Timothy W. Russell | Christopher I. Jarvis | Amy Gimma | Sam Abbott | Samuel Clifford | Sebastian Funk | Hamish Gibbs | Yang Liu | Carl A. B. Pearson | Nikos I. Bosse | Rosalind M. Eggo | Adam J. Kucharski | W. John Edmunds | Centre for the Mathematical Modelling of Infectious Diseases COVID-19 Working Group

Living HTA: Automating Health Technology Assessment with R

JOURNAL ARTICLE published 21 July 2022 in Wellcome Open Research

Research funded by Wellcome Trust (108903; 224853)

Authors: Robert A. Smith | Paul P. Schneider | Wael Mohammed

A pneumococcal controlled human infection model in Malawi: Transfer of an established pneumococcal carriage model from Liverpool, UK to Blantyre, Malawi – A feasibility study

JOURNAL ARTICLE published 11 February 2020 in Wellcome Open Research

Research funded by Liverpool School of Tropical Medicine (19-017) | Wellcome Trust (211433)

Authors: Ben Morton | Sarah Burr | Kondwani Jambo | Jamie Rylance | Marc Y.R. Henrion | Ndaziona Peter Banda | Edna Nsomba | Blessings Kapumba | Lucinda Manda-Taylor | Clemens Masesa | Daniela Ferrreira | Stephen B. Gordon | MARVELS Consortium

Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study

JOURNAL ARTICLE published 6 October 2023 in Wellcome Open Research

Research funded by National Institute for Health Research Health Protection Research Unit (NIHR200929) | Wellcome Trust (208812) | EU grant (QLG4-CT-2000-00640)

Authors: Jada Hackman | Carmen Sheppard | Jody Phelan | William Jones-Warner | Ben Sobkowiak | Sonal Shah | David Litt | Norman K. Fry | Michiko Toizumi | Lay-Myint Yoshida | Martin Hibberd | Elizabeth Miller | Stefan Flasche | Stéphane Hué

Increased expression of Polδ does not alter the canonical replication program in vivo

JOURNAL ARTICLE published 4 May 2021 in Wellcome Open Research

Research funded by Wellcome Trust (110047)

Authors: Róbert Zach | Antony M. Carr

Checklists to guide the supportive and critical care of tuberculous meningitis

JOURNAL ARTICLE published 7 February 2020 in Wellcome Open Research

Research funded by Wellcome Trust (110179)

Authors: Joseph Donovan | Ursula K. Rohlwink | Elizabeth W. Tucker | Nguyen Thi Thu Hiep | Guy E. Thwaites | Anthony A. Figaji | Tuberculous Meningitis International Research Consortium