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Effects of a novel, non-invasive pre-hatch application of probiotic for broilers on development of cecum microbiota and production performance

JOURNAL ARTICLE published 5 September 2023 in Animal Microbiome

Authors: Kasper Rømer Villumsen | Dorthe Sandvang | Gisle Vestergård | Mia Son Räfle Olsen | Johanne Juul | Morten Dencker | Johannes Kudsk | Louise Ladefoged Poulsen

Resistomes and microbiome of meat trimmings and colon content from culled cows raised in conventional and organic production systems

JOURNAL ARTICLE published December 2022 in Animal Microbiome

Research funded by Agricultural Research Service (3040-42000-019)

Authors: Margaret D. Weinroth | Kevin M. Thomas | Enrique Doster | Amit Vikram | John W. Schmidt | Terrance M. Arthur | Tommy L. Wheeler | Jennifer K. Parker | Ayanna S. Hanes | Najla Alekoza | Cory Wolfe | Jessica L. Metcalf | Paul S. Morley | Keith E. Belk

Effect of maternal separation and transportation stress on the bovine upper respiratory tract microbiome and the immune response to resident opportunistic pathogens

JOURNAL ARTICLE published December 2021 in Animal Microbiome

Authors: Nilusha Malmuthuge | Angela Howell | Natasa Arsic | Tracy Prysliak | Jose Perez-Casal | Philip Griebel

Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)

JOURNAL ARTICLE published 6 January 2021 in Animal Microbiome

Authors: Raphael Eisenhofer | Kristofer M. Helgen | David Taggart

Agaricus subrufescens fermented rye affects the development of intestinal microbiota, local intestinal and innate immunity in suckling-to-nursery pigs

JOURNAL ARTICLE published 11 April 2023 in Animal Microbiome

Authors: Caifang Wen | Mirelle Geervliet | Hugo de Vries | Lluís Fabà | Petra J. Roubos-van den Hil | Kerstin Skovgaard | Huub F. J. Savelkoul | Henk A. Schols | Jerry M. Wells | Edwin Tijhaar | Hauke Smidt

Development of the equine hindgut microbiome in semi-feral and domestic conventionally-managed foals

JOURNAL ARTICLE published December 2020 in Animal Microbiome

Authors: Meredith K. Tavenner | Sue M. McDonnell | Amy S. Biddle

Comparison of canine colostrum and milk using a multi-omics approach

JOURNAL ARTICLE published 22 April 2024 in Animal Microbiome

Authors: Alisa Cohen | Sondra Turjeman | Rachel Levin | Smadar Tal | Omry Koren

The microbial environment modulates non-genetic maternal effects on egg immunity

JOURNAL ARTICLE published December 2022 in Animal Microbiome

Research funded by Nederlandse Organisatie voor Wetenschappelijk Onderzoek (VIDI 864.10.012)

Authors: H. Pieter J. van Veelen | Joana Falcão Salles | Kevin D. Matson | G. Sander van Doorn | Marco van der Velde | B. Irene Tieleman

Effect of copper sulfate on the external microbiota of adult common snook (Centropomus undecimalis)

JOURNAL ARTICLE published 2 March 2021 in Animal Microbiome

Authors: Andrea M. Tarnecki | Noah J. Levi | Matthew Resley | Kevan Main

Gut microbiome is affected by gut region but robust to host physiological changes in captive active-season ground squirrels

JOURNAL ARTICLE published December 2021 in Animal Microbiome

Research funded by national institute of general medical sciences (P20GM130443)

Authors: Kirsten Grond | Courtney C. Kurtz | Jasmine Hatton | Michelle M. Sonsalla | Khrystyne N. Duddleston

No evidence for associations between brood size, gut microbiome diversity and survival in great tit (Parus major) nestlings

JOURNAL ARTICLE published 22 March 2023 in Animal Microbiome

Research funded by HORIZON EUROPE Marie Sklodowska-Curie Actions (894963)

Authors: Martta Liukkonen | Mikaela Hukkanen | Nina Cossin-Sevrin | Antoine Stier | Eero Vesterinen | Kirsten Grond | Suvi Ruuskanen

The gut microbiome changes in wild type and IL-18 knockout mice after 9.0 Gy total body irradiation

JOURNAL ARTICLE published 7 September 2023 in Animal Microbiome

Research funded by NIH/NIAID/RNCP All Government IAA (AFR-B2-10449,AFR-B2-10449) | Armed Forces Radiobiology Research Institute, Uniformed Services University (RAB24360) | Defense Medical Research and Development Program JPC-7 (AFR-B2-10631)

Authors: Wanchang Cui | Lisa Hull | Alex Zizzo | Li Wang | Bin Lin | Min Zhai | Mang Xiao

Microbiomes of a specialist caterpillar are consistent across different habitats but also resemble the local soil microbial communities

JOURNAL ARTICLE published December 2020 in Animal Microbiome

Research funded by Nederlandse Organisatie voor Wetenschappelijk Onderzoek (865.14.006)

Authors: Sofia I. F. Gomes | Anna M. Kielak | S. Emilia Hannula | Robin Heinen | Renske Jongen | Ivor Keesmaat | Jonathan R. De Long | T. Martijn Bezemer

The dysbiosis of ovine foot microbiome during the development and treatment of contagious ovine digital dermatitis

JOURNAL ARTICLE published 17 February 2021 in Animal Microbiome

Research funded by Biotechnology and Biological Sciences Research Council (BB/N002121/1)

Authors: J. S. Duncan | J. W. Angell | P. Richards | L. Lenzi | G. J. Staton | D. Grove-White | S. Clegg | G. Oikonomou | S. D. Carter | N. J. Evans

Evolution of rumen and oral microbiota in calves is influenced by age and time of weaning

JOURNAL ARTICLE published December 2021 in Animal Microbiome

Authors: Nida Amin | Sarah Schwarzkopf | Asako Kinoshita | Johanna Tröscher-Mußotter | Sven Dänicke | Amélia Camarinha-Silva | Korinna Huber | Jana Frahm | Jana Seifert

Metagenomics reveals differences in microbial composition and metabolic functions in the rumen of dairy cows with different residual feed intake

JOURNAL ARTICLE published 8 March 2022 in Animal Microbiome

Research funded by National Natural Science Foundation of China (31872380) | Agriculture Research System of China (CARS-36)

Authors: Yunyi Xie | Huizeng Sun | Mingyuan Xue | Jianxin Liu

Dietary enrichment of resistant starches or fibers differentially alter the feline fecal microbiome and metabolite profile

JOURNAL ARTICLE published 5 December 2022 in Animal Microbiome

Research funded by USDA Hatch Grant (ILLU-538-937)

Authors: Anne H. Lee | Aashish R. Jha | Sungho Do | Elisa Scarsella | Justin Shmalberg | Amy Schauwecker | Andrew J. Steelman | Ryan W. Honaker | Kelly S. Swanson

Sustainable plant-based diets promote rainbow trout gut microbiota richness and do not alter resistance to bacterial infection

JOURNAL ARTICLE published December 2021 in Animal Microbiome

Research funded by Fonds Unique Interministériel (AAP n°20 NINAQUA) | French government’s Investissement d’Avenir Program, Laboratoire d’Excellence “Integrative Biology of Emerging Infectious Diseases” (ANR-10-LABX-62-IBEID) | Fondation pour la Recherche Médicale (DEQ20180339185)

Authors: David Pérez-Pascual | Ana Elena Pérez-Cobas | Dimitri Rigaudeau | Tatiana Rochat | Jean-François Bernardet | Sandrine Skiba-Cassy | Yann Marchand | Eric Duchaud | Jean-Marc Ghigo

Bacteroidetes to Firmicutes: captivity changes the gut microbiota composition and diversity in a social subterranean rodent

JOURNAL ARTICLE published 10 February 2023 in Animal Microbiome

Authors: Hanna M. Bensch | Conny Tolf | Jonas Waldenström | Daniel Lundin | Markus Zöttl

Classification and prediction of Mycobacterium Avium subsp. Paratuberculosis (MAP) shedding severity in cattle based on young stock heifer faecal microbiota composition using random forest algorithms

JOURNAL ARTICLE published December 2021 in Animal Microbiome

Research funded by ministerie van landbouw, natuur en voedselkwaliteit (WOT-01-002-002.02)

Authors: Alexander Umanets | Annemieke Dinkla | Stephanie Vastenhouw | Lars Ravesloot | Ad P. Koets