Correction to: Non contiguous-finished genome sequence and description of Bacillus timonensis sp. nov

JOURNAL ARTICLE published 7 June 2023 in Environmental Microbiome

Authors: Sahare Kokcha | Ajay Kumar Mishra | Jean-Christophe Lagier | Matthieu Million | Quentin Leroy | Didier Raoult | Pierre-Edouard Fournier

Isoprene-degrading bacteria associated with the phyllosphere of Salix fragilis, a high isoprene-emitting willow of the Northern Hemisphere

JOURNAL ARTICLE published 26 August 2021 in Environmental Microbiome

Research funded by Natural Environment Research Council (NE/J009725/1,NE/R000131/1) | European Research Council (694578—IsoMet)

Authors: Lisa Gibson | Andrew T. Crombie | Niall P. McNamara | J. Colin Murrell

Microbial communities colonising plastics during transition from the wastewater treatment plant to marine waters

JOURNAL ARTICLE published 29 April 2024 in Environmental Microbiome

Research funded by Natural Environment Research Council (NE/S004548,NE/S004548,NE/S004548,NE/S004548,NE/S004548,NE/S005501/1,NE/S005501/1,NE/S004548,NE/S004548,NE/S004548) | European Regional Development Fund (81280,81280,81280,81280,81280,81280,81280) | Horizon 2020 Framework Programme (101000327,101000327,101000327)

Authors: Constance L. Tulloch | Rafael Bargiela | Gwion B. Williams | Tatyana N. Chernikova | Benjamin M. Cotterell | Elizabeth M. H. Wellington | Joseph Christie-Oleza | David N. Thomas | Davey L. Jones | Peter N. Golyshin

Accurate prediction of metagenome-assembled genome completeness by MAGISTA, a random forest model built on alignment-free intra-bin statistics

JOURNAL ARTICLE published 5 March 2022 in Environmental Microbiome

Authors: Gleb Goussarov | Jürgen Claesen | Mohamed Mysara | Ilse Cleenwerck | Natalie Leys | Peter Vandamme | Rob Van Houdt

Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond

JOURNAL ARTICLE published December 2020 in Environmental Microbiome

Research funded by United States Department of Agriculture-National Institute of Food and Agriculture (2016-68007-25064) | National Science Foundation (1632976)

Authors: Jessica Chopyk | Daniel J. Nasko | Sarah Allard | Anthony Bui | Mihai Pop | Emmanuel F. Mongodin | Amy R. Sapkota

Frequency of occurrence and habitat selection shape the spatial variation in the antibiotic resistome in riverine ecosystems in eastern China

JOURNAL ARTICLE published 2 November 2022 in Environmental Microbiome

Authors: Chunxia Jiang | Haiyang Chen | Hans-Peter Grossart | Quanfa Zhang | Robby Stoks | Yi Zhao | Feng Ju | Wenzhi Liu | Yuyi Yang

Phytoplankton ecology in the early years of a boreal oil sands end pit lake

JOURNAL ARTICLE published 12 January 2024 in Environmental Microbiome

Research funded by Natural Sciences and Engineering Research Council of Canada (CRDPJ 542973-19,CRDPJ 542973-19,CRDPJ 542973-19,CRDPJ 542973-19)

Authors: Chantel C. Furgason | Angela V. Smirnova | Joel B. Dacks | Peter F. Dunfield

Estuarine gradients dictate spatiotemporal variations of microbiome networks in the Chesapeake Bay

JOURNAL ARTICLE published December 2021 in Environmental Microbiome

Research funded by National Science Foundation (MCB-0132070,MCB-0238515,MCB-0537041) | National Natural Science Foundation of China (91851210,41530105) | Southern University of Science and Technology (ZDSYS201802081843490) | Southern Marine Science and Engineering Guangdong Laboratory (K19313901)

Authors: Hualong Wang | Feng Chen | Chuanlun Zhang | Min Wang | Jinjun Kan

Teasing apart the host-related, nutrient-related and temperature-related effects shaping the phenology and microbiome of the tropical seagrass Halophila stipulacea

JOURNAL ARTICLE published December 2022 in Environmental Microbiome

Research funded by Italy-Israel binational fund (3-15152) | ICA in Israel (03-16-06a)

Authors: Amir Szitenberg | Pedro Beca-Carretero | Tomás Azcárate-García | Timur Yergaliyev | Rivka Alexander-Shani | Gidon Winters

Coupled DNA-labeling and sequencing approach enables the detection of viable-but-non-culturable Vibrio spp. in irrigation water sources in the Chesapeake Bay watershed

JOURNAL ARTICLE published December 2021 in Environmental Microbiome

Research funded by National Institute of Food and Agriculture (2016-68007-25064) | National Science Foundation (1828910)

Authors: Leena Malayil | Suhana Chattopadhyay | Emmanuel F. Mongodin | Amy R. Sapkota

Correction to: Grapevine wood microbiome analysis identifies key fungal pathogens and potential interactions with the bacterial community implicated in grapevine trunk disease appearance

JOURNAL ARTICLE published December 2022 in Environmental Microbiome

Authors: Fotios Bekris | Sotirios Vasileiadis | Elena Papadopoulou | Anastasios Samaras | Stefanos Testempasis | Danae Gkizi | Georgia Tavlaki | Aliki Tzima | Epaminondas Paplomatas | Emmanuel Markakis | George Karaoglanidis | Kalliope K. Papadopoulou | Dimitrios G. Karpouzas

Genome-centric resolution of novel microbial lineages in an excavated Centrosaurus dinosaur fossil bone from the Late Cretaceous of North America

JOURNAL ARTICLE published December 2020 in Environmental Microbiome

Research funded by N/A (N/A, please see Funding section)

Authors: Renxing Liang | Maggie C. Y. Lau | Evan T. Saitta | Zachary K. Garvin | Tullis C. Onstott

Integrating multi-platform assembly to recover MAGs from hot spring biofilms: insights into microbial diversity, biofilm formation, and carbohydrate degradation

JOURNAL ARTICLE published 6 May 2024 in Environmental Microbiome

Research funded by Malaysia Fundamental Research Grant Scheme (FRGS/1/2023/STG02/UTM/02/1, FRGS/1/2019/STG03/UTM/02/1, FRGS/1/2019/STG04/UTM/02/4,FRGS/1/2023/STG02/UTM/02/1, FRGS/1/2019/STG03/UTM/02/1, FRGS/1/2019/STG04/UTM/02/4,FRGS/1/2023/STG02/UTM/02/1, FRGS/1/2019/STG03/UTM/02/1, FRGS/1/2019/STG04/UTM/02/4,FRGS/1/2023/STG02/UTM/02/1, FRGS/1/2019/STG03/UTM/02/1, FRGS/1/2019/STG04/UTM/02/4,FRGS/1/2023/STG02/UTM/02/1, FRGS/1/2019/STG03/UTM/02/1, FRGS/1/2019/STG04/UTM/02/4) | UTM QuickWin grant (4J549,4J549) | Singapore Ministry of Education ARC Tier 2 fund (T2EP30123-0028) | National Science Foundation (1736255, 1849206, and 1920954)

Authors: Kok Jun Liew | Saleha Shahar | Mohd Shahir Shamsir | Nawal Binti Shaharuddin | Chee Hung Liang | Kok-Gan Chan | Stephen Brian Pointing | Rajesh Kumar Sani | Kian Mau Goh

Niche–dependent sponge hologenome expression profiles and the host-microbes interplay: a case of the hawaiian demosponge Mycale Grandis

JOURNAL ARTICLE published 8 April 2024 in Environmental Microbiome

Research funded by This work was supported by the National Natural Science Foundation of China (31861143020, 41776138)

Authors: Fang Liu | Taewoo Ryu | Timothy Ravasi | Xin Wang | Guangyi Wang | Zhiyong Li

Endorhizosphere of indigenous succulent halophytes: a valuable resource of plant growth promoting bacteria

JOURNAL ARTICLE published 18 March 2023 in Environmental Microbiome

Research funded by Ministarstvo Prosvete, Nauke i Tehnološkog Razvoja (451-03-47/2023-01/ 200042,451-03-47/2023-01/ 200042,451-03-47/2023-01/200116,451-03-47/2023-01/200116)

Authors: Milica Dragojević | Nada Stankovic | Lidija Djokic | Vera Raičević | Jelena Jovičić-Petrović

Rice developmental stages modulate rhizosphere bacteria and archaea co-occurrence and sensitivity to long-term inorganic fertilization in a West African Sahelian agro-ecosystem

JOURNAL ARTICLE published 17 May 2023 in Environmental Microbiome

Authors: Donald Tchouomo Dondjou | Abdala Gamby Diedhiou | Daouda Mbodj | Marie-Thérèse Mofini | Sarah Pignoly | Cheikh Ndiaye | Issa Diedhiou | Komi Assigbetse | Baboucarr Manneh | Laurent Laplaze | Aboubacry Kane

Potato root-associated microbiomes adapt to combined water and nutrient limitation and have a plant genotype-specific role for plant stress mitigation

JOURNAL ARTICLE published 14 March 2023 in Environmental Microbiome

Research funded by European Commission (727247,727247,727247,727247,727247,727247)

Authors: Hanna Faist | Friederike Trognitz | Livio Antonielli | Sarah Symanczik | Philip J. White | Angela Sessitsch

An in-depth evaluation of metagenomic classifiers for soil microbiomes

JOURNAL ARTICLE published 28 March 2024 in Environmental Microbiome

Research funded by VistaMilk (SFI/16/RC/3835) | Teagasc Walsh Scholarship Programme (Ref: 2020019)

Authors: Niranjana Rose Edwin | Amy Heather Fitzpatrick | Fiona Brennan | Florence Abram | Orla O’Sullivan

In silico prediction of potential indigenous microbial biomarkers in Penaeus vannamei identified through meta-analysis and genome-scale metabolic modelling

JOURNAL ARTICLE published 11 January 2023 in Environmental Microbiome

Research funded by Department of Science and Technology, India (PDF 2020/000267) | Indian Council of Agriculture Research (Network project on Agricultural Bioinformatics and Computational Biology)

Authors: Neelakantan Thulasi Devika | Vinaya Kumar Katneni | Ashok Kumar Jangam | Panjan Nathamuni Suganya | Mudagandur Shashi Shekhar | Karingalakkandy Poochirian Jithendran

Crop rotation significantly influences the composition of soil, rhizosphere, and root microbiota in canola (Brassica napus L.)

JOURNAL ARTICLE published 9 May 2023 in Environmental Microbiome

Research funded by Canola Agronomic Research Program (CARP#2018.14)

Authors: Jennifer R. Town | Tim Dumonceaux | Breanne Tidemann | Bobbi L. Helgason