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TRANSFAC Retrieval Program: A Network Model Database of Eukaryotic Transcription Regulating Sequences and Proteins JOURNAL ARTICLE published January 1994 in Journal of Computational Biology |
A Simple Iterative Approach to Parameter Optimization JOURNAL ARTICLE published August 2000 in Journal of Computational Biology |
JOURNAL ISSUE published July 2007 in Journal of Computational Biology |
Bi-Billboard: Symmetrization and Careful Choice of Informant Species Results in Higher Accuracy of Regulatory Element Prediction JOURNAL ARTICLE published June 2011 in Journal of Computational Biology |
BCL::Contact–Low Confidence Fold Recognition Hits Boost Protein Contact Prediction and De Novo Structure Determination JOURNAL ARTICLE published February 2010 in Journal of Computational Biology |
Binding Balls: Fast Detection of Binding Sites Using a Property of Spherical Fourier Transform JOURNAL ARTICLE published November 2009 in Journal of Computational Biology |
A Structural EM Algorithm for Phylogenetic Inference JOURNAL ARTICLE published April 2002 in Journal of Computational Biology |
Principal Component Analysis of Binding Energies for Single-Point Mutants of hT2R16 Bound to an Agonist Correlate with Experimental Mutant Cell Response JOURNAL ARTICLE published January 2015 in Journal of Computational Biology |
Chaining Sequence/Structure Seeds for Computing RNA Similarity JOURNAL ARTICLE published March 2015 in Journal of Computational Biology |
Validation of a Mathematical Model of Gene Transcription in Aggregated Cellular Systems: Application to L1 Retrotransposition JOURNAL ARTICLE published April 2007 in Journal of Computational Biology |
Bayesian Sequential Inference for Stochastic Kinetic Biochemical Network Models JOURNAL ARTICLE published April 2006 in Journal of Computational Biology |
Reconstructing Boolean Models of Signaling JOURNAL ARTICLE published March 2013 in Journal of Computational Biology |
Approximation Algorithms for a Genetic Diagnostics Problem JOURNAL ARTICLE published January 1998 in Journal of Computational Biology |
Handling Long Targets and Errors in Sequencing by Hybridization JOURNAL ARTICLE published June 2003 in Journal of Computational Biology |
Statistical Analysis of Global Connectivity and Activity Distributions in Cellular Networks JOURNAL ARTICLE published July 2010 in Journal of Computational Biology |
Characterizing the Empirical Distribution of Prokaryotic Genome n-mers in the Presence of Nullomers JOURNAL ARTICLE published October 2014 in Journal of Computational Biology |
NP-MuScL: Unsupervised Global Prediction of Interaction Networks from Multiple Data Sources JOURNAL ARTICLE published November 2013 in Journal of Computational Biology |
Locating Large-Scale Gene Duplication Events through Reconciled Trees: Implications for Identifying Ancient Polyploidy Events in Plants JOURNAL ARTICLE published August 2009 in Journal of Computational Biology |
The Integration of Genetic Maps Using Bayesian Inference JOURNAL ARTICLE published June 2010 in Journal of Computational Biology |
Haplotype Reconstruction in Large Pedigrees with Untyped Individuals through IBD Inference JOURNAL ARTICLE published November 2011 in Journal of Computational Biology |