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Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity

JOURNAL ARTICLE published May 2023 in Genome Research

Research funded by National Institutes of Health (1ZIAHG200401,1ZIBHG000196)

Authors: Cory A. Weller | Ilya Andreev | Michael J. Chambers | Morgan Park | Joshua S. Bloom | Meru J. Sadhu | NISC Comparative Sequencing Program

Active retrotransposons help maintain pericentromeric heterochromatin required for faithful cell division

JOURNAL ARTICLE published November 2020 in Genome Research

Research funded by National Natural Science Foundation of China (91940306,31871294,31520103905) | National Key R&D Program of China (2016YFC0901702,2016YFC09010002) | National Institutes of Health (HG004659,GM052872)

Authors: Yajing Hao | Dongpeng Wang | Shuheng Wu | Xiao Li | Changwei Shao | Peng Zhang | Jia-Yu Chen | Do-Hwan Lim | Xiang-Dong Fu | Runsheng Chen | Shunmin He

Identification of 3'-terminal exons from yeast artificial chromosomes.

JOURNAL ARTICLE published 1 June 1995 in Genome Research

Authors: D B Krizman | T A Hofmann | U DeSilva | E D Green | P S Meltzer | J M Trent

PCR analysis of the H ferritin multigene family reveals the existence of two classes of processed pseudogenes.

JOURNAL ARTICLE published 1 October 1994 in Genome Research

Authors: B Quaresima | M T Tiano | A Porcellini | P D'Agostino | M C Faniello | M A Bevilacqua | F Cimino | F Costanzo

A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles

JOURNAL ARTICLE published March 2006 in Genome Research

Authors: Li-Wei Chang | Rakesh Nagarajan | Jeffrey A. Magee | Jeffrey Milbrandt | Gary D. Stormo

Molecular cloning of a translocation breakpoint hotspot in 22q11

JOURNAL ARTICLE published April 2007 in Genome Research

Authors: Hiroki Kurahashi | Hidehito Inagaki | Eriko Hosoba | Takema Kato | Tamae Ohye | Hiroshi Kogo | Beverly S. Emanuel

The PML-associated protein DEK regulates the balance of H3.3 loading on chromatin and is important for telomere integrity

JOURNAL ARTICLE published October 2014 in Genome Research

Authors: Kristina Ivanauskiene | Erwan Delbarre | James D. McGhie | Thomas Küntziger | Lee H. Wong | Philippe Collas

Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks

JOURNAL ARTICLE published February 2015 in Genome Research

Research funded by NIH (U54CA121852,R01CA109755,NCIcaBIG29XS192,12ST1103,1U01HL111566-01,5U01CA164184-02) | NCI (P30 CA016672)

Authors: Hua-Sheng Chiu | David Llobet-Navas | Xuerui Yang | Wei-Jen Chung | Alberto Ambesi-Impiombato | Archana Iyer | Hyunjae Ryan Kim | Elena G. Seviour | Zijun Luo | Vasudha Sehgal | Tyler Moss | Yiling Lu | Prahlad Ram | José Silva | Gordon B. Mills | Andrea Califano | Pavel Sumazin

Novel PAX6 Binding Sites in the Human Genome and the Role of Repetitive Elements in the Evolution of Gene Regulation

JOURNAL ARTICLE published 1 November 2002 in Genome Research

Authors: Yi-Hong Zhou | Jessica B. Zheng | Xun Gu | Grady F. Saunders | W.-K. Alfred Yung

Processed Pseudogenes of Human Endogenous Retroviruses Generated by LINEs: Their Integration, Stability, and Distribution

JOURNAL ARTICLE published 1 March 2002 in Genome Research

Authors: Adam Pavlíček | Jan Pačes | Daniel Elleder | Jiří Hejnar

Errata for vol. 11, p. 817

JOURNAL ARTICLE published 1 July 2001 in Genome Research

Genome-wide promoter assembly in E. coli measured at single-base resolution

JOURNAL ARTICLE published 28 April 2022 in Genome Research

Research funded by National Institutes of Health (ES013768)

Authors: Jordan John | Javaid Jabbar | Nitika Badjatia | Matthew J. Rossi | William K.M. Lai | B. Franklin Pugh

Use of stock solutions to simplify mRNA quantitation by reverse transcription--PCR assays.

JOURNAL ARTICLE published May 1993 in Genome Research

Authors: D Chen | V L Magnuson | B Steffensen | R J Klebe

Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast

JOURNAL ARTICLE published June 2016 in Genome Research

Research funded by National Institutes of Health (R01GM25232)

Authors: Gregory T. Booth | Isabel X. Wang | Vivian G. Cheung | John T. Lis

Nucleosomal signatures impose nucleosome positioning in coding and noncoding sequences in the genome

JOURNAL ARTICLE published November 2016 in Genome Research

Research funded by Spanish Ministerio de Economía y Competitividad (BFU2014-52143-P)

Authors: Sara González | Alicia García | Enrique Vázquez | Rebeca Serrano | Mar Sánchez | Luis Quintales | Francisco Antequera

Rare versus common variants in pharmacogenetics: SLCO1B1 variation and methotrexate disposition

JOURNAL ARTICLE published January 2012 in Genome Research

Authors: Laura B. Ramsey | Gitte H. Bruun | Wenjian Yang | Lisa R. Treviño | Selina Vattathil | Paul Scheet | Cheng Cheng | Gary L. Rosner | Kathleen M. Giacomini | Yiping Fan | Alex Sparreboom | Torben S. Mikkelsen | Thomas J. Corydon | Ching-Hon Pui | William E. Evans | Mary V. Relling

Whole-exome sequencing combined with functional genomics reveals novel candidate driver cancer genes in endometrial cancer

JOURNAL ARTICLE published November 2012 in Genome Research

Authors: Han Liang | Lydia W.T. Cheung | Jie Li | Zhenlin Ju | Shuangxing Yu | Katherine Stemke-Hale | Turgut Dogruluk | Yiling Lu | Xiuping Liu | Chao Gu | Wei Guo | Steven E. Scherer | Hannah Carter | Shannon N. Westin | Mary D. Dyer | Roeland G.W. Verhaak | Fan Zhang | Rachel Karchin | Chang-Gong Liu | Karen H. Lu | Russell R. Broaddus | Kenneth L. Scott | Bryan T. Hennessy | Gordon B. Mills

Multiplex mapping of chromatin accessibility and DNA methylation within targeted single molecules identifies epigenetic heterogeneity in neural stem cells and glioblastoma

JOURNAL ARTICLE published February 2014 in Genome Research

Authors: Nancy H. Nabilsi | Loic P. Deleyrolle | Russell P. Darst | Alberto Riva | Brent A. Reynolds | Michael P. Kladde

Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

JOURNAL ARTICLE published April 2014 in Genome Research

Authors: Stefan Washietl | Manolis Kellis | Manuel Garber

Long noncoding RNAs are rarely translated in two human cell lines

JOURNAL ARTICLE published September 2012 in Genome Research

Authors: Balázs Bánfai | Hui Jia | Jainab Khatun | Emily Wood | Brian Risk | William E. Gundling | Anshul Kundaje | Harsha P. Gunawardena | Yanbao Yu | Ling Xie | Krzysztof Krajewski | Brian D. Strahl | Xian Chen | Peter Bickel | Morgan C. Giddings | James B. Brown | Leonard Lipovich