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Gene duplication and genetic innovation in cereal genomes JOURNAL ARTICLE published February 2019 in Genome Research Research funded by Office of Science of the U.S. Department of Energy (DE-AC02-05CH11231) |
Disease-specific biases in alternative splicing and tissue-specific dysregulation revealed by multitissue profiling of lymphocyte gene expression in type 1 diabetes JOURNAL ARTICLE published November 2017 in Genome Research Research funded by National Institutes of Health (DP3DK085678/DK/NIDDK,AI42288,GM102227/NIGMS) |
Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules JOURNAL ARTICLE published January 2021 in Genome Research Research funded by NIH/NIDCR (F32-DE026947,K99-DE029228,R00-DE024543) |
On the origin of prokaryotic species JOURNAL ARTICLE published May 2009 in Genome Research |
The completion of the Mammalian Gene Collection (MGC) JOURNAL ARTICLE published December 2009 in Genome Research |
Copy number variation leads to considerable diversity for B but not A haplotypes of the human KIR genes encoding NK cell receptors JOURNAL ARTICLE published October 2012 in Genome Research |
Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting JOURNAL ARTICLE published November 2012 in Genome Research |
Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers JOURNAL ARTICLE published May 2010 in Genome Research |
Features of 5′-splice-site efficiency derived from disease-causing mutations and comparative genomics JOURNAL ARTICLE published January 2008 in Genome Research |
Evolution of the mammalian transcription factor binding repertoire via transposable elements JOURNAL ARTICLE published November 2008 in Genome Research |
Genome specialization and decay of the strangles pathogen, Streptococcus equi, is driven by persistent infection JOURNAL ARTICLE published September 2015 in Genome Research Research funded by Wellcome Trust (098051) |
Deep learning of the regulatory grammar of yeast 5′ untranslated regions from 500,000 random sequences JOURNAL ARTICLE published December 2017 in Genome Research Research funded by Defense Advanced Research Projects Agency (W911NF-11-2-0068) | National Science Foundation (CCF 1317653) | National Institutes of Health (P41 GM103533) |
Tandem repeat variation in human and great ape populations and its impact on gene expression divergence JOURNAL ARTICLE published November 2015 in Genome Research Research funded by Swiss National Science Foundation (31003A_146137) | European Research Council (260372) | Ministerio de Ciencia e Innovación (BFU2014-55090-P) | National Institutes of Health (HG006696,MH097018,DA033660) | March of Dimes Foundation (6-FY13-92) |
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum JOURNAL ARTICLE published January 2016 in Genome Research Research funded by Wellcome Trust (093161/Z/10/Z) |
Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana JOURNAL ARTICLE published August 2018 in Genome Research Research funded by National Institutes of Health (DP2OD008371) |
Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals JOURNAL ARTICLE published April 2018 in Genome Research Research funded by Wellcome Trust (206194) | Wellcome Trust (WT099198MA,104792/Z/14/Z) |
Genome-wide chemical mutagenesis screens allow unbiased saturation of the cancer genome and identification of drug resistance mutations JOURNAL ARTICLE published April 2017 in Genome Research Research funded by Cancer Research UK (C13740/A16629) |
Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy JOURNAL ARTICLE published 6 May 2024 in Genome Research Research funded by DAAD (91730547) | Deutsche Forschungsgemeinschaft (SFB/TR-84 TP C01) |
Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions JOURNAL ARTICLE published 6 May 2024 in Genome Research Research funded by Alpe d'HuZes/Dutch Cancer Society (NKI-2014-7140) | “Ministère de l’Économie, de la Science et de l'Innovation du Québec” (PSR-SIIRI-701) | National Institutes of Health (U19 CA148065,X01HG007492) | Cancer Research UK (C1287/A10118,C1287/A16563,C1287/A10710) | The European Union (HEALTH-F2-2009-223175,H2020 633784,634935) |
Multiple Pristionchus pacificus genomes reveal distinct evolutionary dynamics between de novo candidates and duplicated genes JOURNAL ARTICLE published July 2022 in Genome Research |