MCCS, a novel characterization method for protein–ligand complex

JOURNAL ARTICLE published 20 July 2021 in Briefings in Bioinformatics

Research funded by National Institutes of Health (P30 DA035778A1)

Authors: Maozi Chen | Zhiwei Feng | Siyi Wang | Weiwei Lin | Xiang-Qun Xie

Veterinary systems biology for bridging the phenotype–genotype gap via computational modeling for disease epidemiology and animal welfare

JOURNAL ARTICLE published 22 January 2024 in Briefings in Bioinformatics

Research funded by National Research Foundation of Korea (NRF-2022R1A2C1005830)

Authors: Rajesh Kumar Pathak | Jun-Mo Kim

Interoperability with Moby 1.0--It's better than sharing your toothbrush!

JOURNAL ARTICLE published 11 January 2008 in Briefings in Bioinformatics

Authors: The BioMoby Consortium

A fast and accurate method for SARS-CoV-2 genomic tracing

JOURNAL ARTICLE published 22 September 2023 in Briefings in Bioinformatics

Research funded by National Natural Science Foundation of China (82161148009) | Strategic Priority Research Program of the Chinese Academy of Sciences, China (XDB38030400) | Capital Health Development and Research Special Programme (2021-1G-3012) | Key Collaborative Research Program of the Alliance of International Science Organizations (ANSO-CR-KP-2022-09)

Authors: Wentai Ma | Leisheng Shi | Mingkun Li

MHCBI: a pipeline for calculating peptide-MHC binding energy using semi-empirical quantum mechanical methods with explicit/implicit solvent models

JOURNAL ARTICLE published 5 November 2021 in Briefings in Bioinformatics

Authors: Carlos A Ortiz-Mahecha | William A Agudelo | Manuel A Patarroyo | Manuel E Patarroyo | Carlos F Suárez

Corrigendum to: gmRAD: an integrated SNP calling pipeline for genetic mapping with RADseq across a hybrid population

JOURNAL ARTICLE published 23 March 2020 in Briefings in Bioinformatics

Obituary: Walter Fitch and the orthology paradigm

JOURNAL ARTICLE published 1 September 2011 in Briefings in Bioinformatics

Authors: E. V. Koonin

PEcnv: accurate and efficient detection of copy number variations of various lengths

JOURNAL ARTICLE published 20 September 2022 in Briefings in Bioinformatics

Research funded by Shaanxi’s Natural Science Basic Research Program (2020JC-01)

Authors: Xuwen Wang | Ying Xu | Ruoyu Liu | Xin Lai | Yuqian Liu | Shenjie Wang | Xuanping Zhang | Jiayin Wang

Multiscale modeling of macromolecular biosystems

JOURNAL ARTICLE published 1 July 2012 in Briefings in Bioinformatics

Authors: S. C. Flores | J. Bernauer | S. Shin | R. Zhou | X. Huang

Drug response in association with pharmacogenomics and pharmacomicrobiomics: towards a better personalized medicine

JOURNAL ARTICLE published 1 December 2020 in Briefings in Bioinformatics

Research funded by Developing Excellence in Leadership and Genetics Training for Malaria Elimination in sub-Saharan Africa (107740/Z/15/Z) | National Research Foundation (#RA171111285157/119056)

Authors: Radia Hassan | Imane Allali | Francis E Agamah | Samar S M Elsheikh | Nicholas E Thomford | Collet Dandara | Emile R Chimusa

High-quality pan-genome of Escherichia coli generated by excluding confounding and highly similar strains reveals an association between unique gene clusters and genomic islands

JOURNAL ARTICLE published 18 July 2022 in Briefings in Bioinformatics

Research funded by National Key Research and Development Program of China (2018YFA0903700) | National Natural Science Foundation of China (21621004,31571358)

Authors: Tong Yang | Feng Gao

miRandb: a resource of online services for miRNA research

JOURNAL ARTICLE published 3 January 2017 in Briefings in Bioinformatics

Authors: Seyed Hamid Aghaee-Bakhtiari | Ehsan Arefian | Pierre Lau

Representing, storing and accessing molecular interaction data: a review of models and tools

JOURNAL ARTICLE published 26 September 2006 in Briefings in Bioinformatics

Authors: L. Stromback | V. Jakoniene | H. Tan | P. Lambrix

idenMD-NRF: a ranking framework for miRNA-disease association identification

JOURNAL ARTICLE published 18 July 2022 in Briefings in Bioinformatics

Research funded by National Key Research and Development Program of China (2018AAA0100100) | Beijing Natural Science Foundation (JQ19019)

Authors: Wenxiang Zhang | Hang Wei | Bin Liu

AlloMap6: an R package for genetic linkage analysis in allohexaploids

JOURNAL ARTICLE published 19 September 2016 in Briefings in Bioinformatics

Authors: Xuli Zhu | Huan Li | Meixia Ye | Libo Jiang | Mengmeng Sang | Rongling Wu

Opportunities for community awareness platforms in personal genomics and bioinformatics education

JOURNAL ARTICLE published 30 August 2016 in Briefings in Bioinformatics

Authors: Lucia Bianchi | Pietro Liò

News section

JOURNAL ARTICLE published 1 January 2002 in Briefings in Bioinformatics

Authors: D. S. Gonzalez

A solid quality-control analysis of AB SOLiD short-read sequencing data

JOURNAL ARTICLE published 1 November 2013 in Briefings in Bioinformatics

Authors: S. Castellana | M. Romani | E. M. Valente | T. Mazza

Exploration of cellular reaction systems

JOURNAL ARTICLE published 1 January 2010 in Briefings in Bioinformatics

Authors: M. Kirkilionis

New classifications for quantum bioinformatics: Q-bioinformatics, QCt-bioinformatics, QCg-bioinformatics, and QCr-bioinformatics

JOURNAL ARTICLE published 22 January 2024 in Briefings in Bioinformatics

Authors: Majid Mokhtari | Samane Khoshbakht | Kobra Ziyaei | Mohammad Esmaeil Akbari | Sayyed Sajjad Moravveji