ESTree db: a Tool for Peach Functional Genomics

JOURNAL ARTICLE published December 2005 in BMC Bioinformatics

Authors: Barbara Lazzari | Andrea Caprera | Alberto Vecchietti | Alessandra Stella | Luciano Milanesi | Carlo Pozzi

Using BioPAX-Parser (BiP) to enrich lists of genes or proteins with pathway data

JOURNAL ARTICLE published 30 September 2021 in BMC Bioinformatics

Authors: Giuseppe Agapito | Mario Cannataro

Multiple sequence alignments of partially coding nucleic acid sequences

JOURNAL ARTICLE published 28 June 2005 in BMC Bioinformatics

Authors: Roman R Stocsits | Ivo L Hofacker | Claudia Fried | Peter F Stadler

A unified framework for finding differentially expressed genes from microarray experiments

JOURNAL ARTICLE published December 2007 in BMC Bioinformatics

Authors: Jahangheer S Shaik | Mohammed Yeasin

Reconstruction of novel transcription factor regulons through inference of their binding sites

JOURNAL ARTICLE published December 2015 in BMC Bioinformatics

Authors: Abdulkadir Elmas | Xiaodong Wang | Michael S. Samoilov

PubFocus: semantic MEDLINE/PubMed citations analytics through integration of controlled biomedical dictionaries and ranking algorithm

JOURNAL ARTICLE published December 2006 in BMC Bioinformatics

Authors: Maksim V Plikus | Zina Zhang | Cheng-Ming Chuong

SSS-test: a novel test for detecting positive selection on RNA secondary structure

JOURNAL ARTICLE published December 2019 in BMC Bioinformatics

Research funded by Conselho Nacional de Desenvolvimento Científico e Tecnológico (246039/2012-4) | Deutsche Forschungsgemeinschaft (SPP 1738) | Volkswagen Foundation (Evolutionary Biology) | Deutscher Akademischer Austauschdienst (57390771) | Freie Universität Berlin (Center for International Cooperation) | Universität Leipzig (Open Access Publishing)

Authors: Maria Beatriz Walter Costa | Christian Höner zu Siederdissen | Marko Dunjić | Peter F. Stadler | Katja Nowick

DM-MOGA: a multi-objective optimization genetic algorithm for identifying disease modules of non-small cell lung cancer

JOURNAL ARTICLE published 9 January 2023 in BMC Bioinformatics

Authors: Junliang Shang | Xuhui Zhu | Yan Sun | Feng Li | Xiangzhen Kong | Jin-Xing Liu

DectICO: an alignment-free supervised metagenomic classification method based on feature extraction and dynamic selection

JOURNAL ARTICLE published December 2015 in BMC Bioinformatics

Research funded by the National Basic Research Program of China (No. 2012CB316501) | the National Natural Science Foundation of China (61472078)

Authors: Xiao Ding | Fudong Cheng | Changchang Cao | Xiao Sun

Classification of premalignant pancreatic cancer mass-spectrometry data using decision tree ensembles

JOURNAL ARTICLE published December 2008 in BMC Bioinformatics

Authors: Guangtao Ge | G William Wong

Phylogenetic network analysis as a parsimony optimization problem

JOURNAL ARTICLE published December 2015 in BMC Bioinformatics

Authors: Ward C Wheeler

The tree alignment problem

JOURNAL ARTICLE published December 2012 in BMC Bioinformatics

Authors: Andrés Varón | Ward C Wheeler

Gene expression profile of peripheral blood mononuclear cells in response to HIV-VLPs stimulation

JOURNAL ARTICLE published March 2008 in BMC Bioinformatics

Authors: Luigi Buonaguro | Alessandro Monaco | Eleonora Aricò | Ena Wang | Maria Lina Tornesello | George K Lewis | Franco M Marincola | Franco M Buonaguro

The use of concept maps during knowledge elicitation in ontology development processes – the nutrigenomics use case

JOURNAL ARTICLE published December 2006 in BMC Bioinformatics

Authors: Alexander Garcia Castro | Philippe Rocca-Serra | Robert Stevens | Chris Taylor | Karim Nashar | Mark A Ragan | Susanna-Assunta Sansone

Impact of adaptive filtering on power and false discovery rate in RNA-seq experiments

JOURNAL ARTICLE published 24 September 2022 in BMC Bioinformatics

Authors: Sonja Zehetmayer | Martin Posch | Alexandra Graf

The acquisition of novel N-glycosylation sites in conserved proteins during human evolution

JOURNAL ARTICLE published December 2015 in BMC Bioinformatics

Authors: Dong Seon Kim | Yoonsoo Hahn

Unsupervised assessment of microarray data quality using a Gaussian mixture model

JOURNAL ARTICLE published December 2009 in BMC Bioinformatics

Authors: Brian E Howard | Beate Sick | Steffen Heber

A convolutional neural network-based regression model to infer the epigenetic crosstalk responsible for CG methylation patterns

JOURNAL ARTICLE published December 2021 in BMC Bioinformatics

Research funded by Japan Society for the Promotion of Science (JP18H05214)

Authors: Wan Kin Au Yeung | Osamu Maruyama | Hiroyuki Sasaki

Aggregation of experts: an application in the field of “interactomics” (detection of interactions on the basis of genomic data)

JOURNAL ARTICLE published December 2018 in BMC Bioinformatics

Authors: Sinan Abo Alchamlat | Frédéric Farnir

Articles selected from posters presented at the Tenth Annual International Conference on Research in Computational Biology – Preface

JOURNAL ARTICLE published May 2007 in BMC Bioinformatics

Authors: Alberto Apostolico | Raffaele Giancarlo | Concettina Guerra | Giuseppe Lancia