Sparse factor model for co-expression networks with an application using prior biological knowledge

JOURNAL ARTICLE published 1 June 2016 in Statistical Applications in Genetics and Molecular Biology

Research funded by Agence Nationale de la Recherche (FatInteger ANR-11-BSV7-0004)

Authors: Yuna Blum | Magalie Houée-Bigot | David Causeur

Evaluation of Multiple Models to Distinguish Closely Related Forms of Disease Using DNA Microarray Data: an Application to Multiple Myeloma

JOURNAL ARTICLE published 8 January 2004 in Statistical Applications in Genetics and Molecular Biology

Authors: Johanna Hardin | Michael Waddell | C. David Page | Fenghuang Zhan | Bart Barlogie | John Shaughnessy | John J Crowley

Adaptive Elastic-Net Sparse Principal Component Analysis for Pathway Association Testing

JOURNAL ARTICLE published 24 January 2011 in Statistical Applications in Genetics and Molecular Biology

Authors: Xi Chen

M-quantile Regression Analysis of Temporal Gene Expression Data

JOURNAL ARTICLE published 22 January 2009 in Statistical Applications in Genetics and Molecular Biology

Authors: Veronica Vinciotti | Keming Yu

A New Approach for the Joint Analysis of Multiple Chip-Seq Libraries with Application to Histone Modification

JOURNAL ARTICLE published 10 January 2012 in Statistical Applications in Genetics and Molecular Biology

Authors: John P. Ferguson | Judy H. Cho | Hongyu Zhao

Estimating the Arm-Wise False Discovery Rate in Array Comparative Genomic Hybridization Experiments

JOURNAL ARTICLE published 19 January 2007 in Statistical Applications in Genetics and Molecular Biology

Authors: Daniel P Gaile | Elizabeth D Schifano | Jeffrey C Miecznikowski | James J Java | Jeffrey M Conroy | Norma J Nowak

Genome-wide association studies with high-dimensional phenotypes

JOURNAL ARTICLE published 1 January 2013 in Statistical Applications in Genetics and Molecular Biology

Authors: Pekka Marttinen | Jussi Gillberg | Aki Havulinna | Jukka Corander | Samuel Kaski

A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data

JOURNAL ARTICLE published 1 January 2016 in Statistical Applications in Genetics and Molecular Biology

Authors: Zhixiang Lin | Mingfeng Li | Nenad Sestan | Hongyu Zhao

Approximate Sample Size Calculations with Microarray Data: An Illustration

JOURNAL ARTICLE published 9 January 2006 in Statistical Applications in Genetics and Molecular Biology

Authors: José A. Ferreira | Aeilko Zwinderman

TRAB: Testing Whether Mutation Frequencies Are Above an Unknown Background

JOURNAL ARTICLE published 14 January 2008 in Statistical Applications in Genetics and Molecular Biology

Authors: Giovanni Parmigiani | Sining Chen | Victor E. Velculescu

Visualisation of Gene Expression Data - the GE-biplot, the Chip-plot and the Gene-plot

JOURNAL ARTICLE published 4 January 2003 in Statistical Applications in Genetics and Molecular Biology

Authors: Yvonne E Pittelkow | Susan R Wilson

GMEPS: a fast and efficient likelihood approach for genome-wide mediation analysis under extreme phenotype sequencing

JOURNAL ARTICLE published 27 January 2022 in Statistical Applications in Genetics and Molecular Biology

Authors: Janaka S. S. Liyanage | Jeremie H. Estepp | Kumar Srivastava | Yun Li | Motomi Mori | Guolian Kang

A New Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity

JOURNAL ARTICLE published 17 January 2006 in Statistical Applications in Genetics and Molecular Biology

Authors: Daniel Dalevi | Devdatt Dubhashi | Malte Hermansson

Reproducibility of biomarker identifications from mass spectrometry proteomic data in cancer studies

JOURNAL ARTICLE published 27 May 2019 in Statistical Applications in Genetics and Molecular Biology

Authors: Yulan Liang | Adam Kelemen | Arpad Kelemen

Importance Sampling for the Infinite Sites Model

JOURNAL ARTICLE published 30 January 2008 in Statistical Applications in Genetics and Molecular Biology

Authors: Asger Hobolth | Marcy K Uyenoyama | Carsten Wiuf

A Multilocus Model for Constructing a Linkage Disequilibrium Map in Human Populations

JOURNAL ARTICLE published 26 January 2009 in Statistical Applications in Genetics and Molecular Biology

Authors: Qin Li | Rongling Wu

Robustness of chemometrics-based feature selection methods in early cancer detection and biomarker discovery

JOURNAL ARTICLE published 13 January 2013 in Statistical Applications in Genetics and Molecular Biology

Authors: Hae Woo Lee | Carl Lawton | Young Jeong Na | Seongkyu Yoon

Genetic association test based on principal component analysis

JOURNAL ARTICLE published 26 January 2017 in Statistical Applications in Genetics and Molecular Biology

Authors: Zhongxue Chen | Shizhong Han | Kai Wang

HMM-DM: identifying differentially methylated regions using a hidden Markov model

JOURNAL ARTICLE published 1 January 2016 in Statistical Applications in Genetics and Molecular Biology

Authors: Xiaoqing Yu | Shuying Sun

An Empirical Bayesian Method for Estimating Biological Networks from Temporal Microarray Data

JOURNAL ARTICLE published 15 January 2010 in Statistical Applications in Genetics and Molecular Biology

Authors: Andrea Rau | Florence Jaffrézic | Jean-Louis Foulley | Rebecca W Doerge