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Implementing Arithmetic and Other Analytic Operations by Transcriptional Regulation

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Sean Cory | Theodore J. Perkins

Stimulus Design for Model Selection and Validation in Cell Signaling

JOURNAL ARTICLE published 2008 in PLoS Computational Biology

Authors: Joshua F. Apgar | Jared E. Toettcher | Drew Endy | Forest M. White | Bruce Tidor

Fundamental Limits to Position Determination by Concentration Gradients

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Filipe Tostevin | Pieter Rein ten Wolde | Martin Howard

Dynamic simulations on the Arachidonic Acid Metabolic Network

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Kun Yang | Wenzhe Ma | Huanhuan Liang | Qi Ouyang | Chao Tang | Luhua Lai

Development of Genomic Sciences in Mexico: A Good Start and a Long Way to Go

JOURNAL ARTICLE published 2007 in PLoS Computational Biology

Authors: Rafael Palacios | Julio Collado-Vides

Unusual Intron Conservation Near Tissue-regulated Exons Found by Splicing Microarrays

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Charles W Sugnet | Karpagam Srinivasan | Tyson A Clark | Georgeann O'Brien | Melissa S Cline | Hui Wang | Alan Williams | David Kulp | John Blume | David Haussler | Manny Ares

Coincidence Detection of Place and Temporal Context in a Network Model of Spiking Hippocampal Neurons

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Yael Katz | William Kath | Nelson Spruston | Michael Hasselmo

PPARĪ± siRNA-Treated Expression Profiles Uncover the Causal Sufficiency Network for Compound-Induced Liver Hypertrophy

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Xudong Dai | Angus T. De Souza | Hongyue Dai | David L. Lewis | Chang-kyu Lee | Andy G. Spencer | Hans Herweijer | Jim E. Hagstrom | Peter S. Linsley | Douglas E. Bassett | Roger G. Ulrich | Yudong He

Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component Analysis

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Andrew Erich Teschendorff | Michel Journee | Pierre A Absil | Rodolphe Sepulchre | Carlos Caldas

Insights into the coupling of duplication events and macroevolution from an age distribution of animal transmembrane gene families

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Guohui Ding | Jiuhong Kang | Qi Liu | Tieliu Shi | Gang Pei | Yixue Li

A Balanced Memory Network

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Yasser Roudi | Peter E Latham

Revealing post-transcriptional regulatory interactions through network-level conservation

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Chang Chan | Olivier Elemento | Saeed Tavazoie

Protein-protein interactions more conserved within than across species

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Sven Mika | Burkhard Rost

Stochastic noise and synchronisation during Dictyostelium aggregation make cAMP oscillations robust

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Jongrae Kim | Pat Heslop-Harrison | Ian Postlethwaite | Declan G Bates

Are There Rearrangement Hotspots in the Human Genome?

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Max Alekseyev | Pavel A. Pevzner

Metabolic Reconstruction and Modeling of Nitrogen Fixation in Rhizobium etli

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Osbaldo Resendis | Jennifer Reed | Sergio Encarnacion | Julio Collado-Vides | Bernhard Palsson

MODELING HER2 EFFECTS ON CELL BEHAVIOR FROM MASS SPECTROMETRY PHOSPHOTYROSINE DATA

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Neil Kumar | Alejandro Wolf-Yadlin | Forest Michael White | Douglas A Lauffenburger

Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Ramon Aragues | Andrej Sali | Jaume Bonet | Marc Marti-Renom | Baldomero Oliva

Selective constraint on noncoding regions of hominid genomes

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Eliot C. Bush | Bruce T Lahn

Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Hailiang Huang | Bruno Jedynak | Joel S. Bader