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Sampling realistic protein conformations using local structural bias

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Thomas Hamelryck | John T. Kent | Anders Krogh

Spike correlations in a songbird agree with a simple Markov population model

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Andrea Weber | Richard Hahnloser

Systematic Analysis of Head-to-head Gene Organization: Evolutionary Conservation and Potential Biological Relevance

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Yuan-Yuan Li | Hui Yu | Zong-Ming Guo | Ting-Qing Guo | Kang Tu | Yixue Li

Ten Simple Rules for Doing Your Best Research, According to Hamming

JOURNAL ARTICLE published 2007 in PLoS Computational Biology

Authors: Thomas C. Erren | Paul Cullen | Michael Erren | Philip E. Bourne

Gamma Oscillations of Spiking Neural Populations Enhance Signal Discrimination

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Naoki Masuda | Brent Doiron

A guild of forty-five CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Daniel Henry Haft | Jeremy Selengut | Emmanuel F Mongodin | Karen E Nelson

Detecting Statistically Significant Common Insertion Sites in Retroviral Insertional Mutagenesis Screens

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Jeroen de Ridder | Anthony Uren | Jaap Kool | Marcel J.T. Reinders | Lodewyk F.A. Wessels

Modeling Systems-Level Regulation of Host Immune Responses

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Juilee Thakar | Mylisa Pilione | Girish Kirimanjeswara | Eric T Harvill | Reka Albert

Computational analysis of mouse piRNA sequence and biogenesis

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Doron Betel | Robert Sheridan | Debora Marks | Chris Sander

Unsupervised learning of visual features through Spike Timing Dependent Plasticity

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Timothée Masquelier | Simon J Thorpe

Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Philippe Lemey | Sergei L. Kosakovsky Pond | Alexei J. Drummond | Oliver G. Pybus | Beth Shapiro | Helena Barroso | Nuno Taveira | andrew Rambaut

Long-range Periodic Patterns in Microbial Genomes Indicate Significant Multi-scale Chromosomal Organization

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Timothy E. Allen | Nathan D. Price | Andrew R. Joyce | Bernhard O. Palsson

Differences in reactivation of tuberculosis induced from anti-TNF treatments are based on bioavailability in granulomatous tissue

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Simeone Marino | Dhruv Sud | Hillarie Plessner | P Ling Lin | John Chan | JoAnne L Flynn | Denise Kirschner

From Inverse Problems in Mathematical Physiology to Quantitative Differential Diagnoses

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Sven Zenker | Jonathan Rubin | Gilles Clermont

Correction: In Search of the Biological Significance of Modular Structures in Protein Networks

JOURNAL ARTICLE published 2007 in PLoS Computational Biology

Authors: Zhi Wang | Jianzhi Zhang

Increasing the Power to Detect Causal Associations among Genes and between Genes and Complex Traits by Combining Genotypic and Gene Expression Data in Segregating Populations

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Jun Zhu | Matthew C. Wiener | Chunsheng Zhang | Arthur Fridman | Eric Minch | Pek Y. Lum | Jeffrey R. Sachs | Eric E. Schadt

Connectivity in the Yeast Cell Cycle Transcription Network: Inferences from Neural Networks

JOURNAL ARTICLE published 2006 in PLoS Computational Biology

Authors: Christopher E. Hart | Eric Mjolsness | Barbara J. Wold

Ten Simple Rules for Getting Published

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Philip E. Bourne

Geometrically Repatterned Immunological Synapses Uncover Formation Mechanisms

JOURNAL ARTICLE published 2006 in PLoS Computational Biology

Authors: Marc Thilo Figge | Michael Meyer-Hermann

Combined Evidence Annotation of Transposable Elements in Genome Sequences

JOURNAL ARTICLE published 2005 in PLoS Computational Biology

Authors: Hadi Quesneville | Casey M. Bergman | Olivier Andrieu | Delphine Autard | Danielle Nouaud | Michael Ashburner | Dominique Anxolabehere