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Long‐range signaling by phosphoprotein waves arising from bistability in protein kinase cascades

JOURNAL ARTICLE published January 2006 in Molecular Systems Biology

Authors: Nick I Markevich | Mikhail A Tsyganov | Jan B Hoek | Boris N Kholodenko

https://doi.org/10.1038/msb4100108 Actions

Tristetraprolin binding site atlas in the macrophage transcriptome reveals a switch for inflammation resolution

JOURNAL ARTICLE published May 2016 in Molecular Systems Biology

Research funded by Austrian Science Fund (SFB 43)

Authors: Vitaly Sedlyarov | Jörg Fallmann | Florian Ebner | Jakob Huemer | Lucy Sneezum | Masa Ivin | Kristina Kreiner | Andrea Tanzer | Claus Vogl | Ivo Hofacker | Pavel Kovarik

https://doi.org/10.15252/msb.20156628 Actions

Can ACE 2 expression explain SARS ‐CoV‐2 infection of the respiratory epithelia in COVID ‐19?

JOURNAL ARTICLE published July 2020 in Molecular Systems Biology

Authors: Martijn C Nawijn | Wim Timens

https://doi.org/10.15252/msb.20209841 Actions

The circadian oscillator analysed at the single‐transcript level

JOURNAL ARTICLE published March 2021 in Molecular Systems Biology

Research funded by Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (310030_173079)

Authors: Nicholas E Phillips | Alice Hugues | Jake Yeung | Eric Durandau | Damien Nicolas | Felix Naef

https://doi.org/10.15252/msb.202010135 Actions

A tunable dual‐promoter integrator for targeting of cancer cells

JOURNAL ARTICLE published January 2010 in Molecular Systems Biology

Authors: Lior Nissim | Roy H Bar‐Ziv

https://doi.org/10.1038/msb.2010.99 Actions

Systems‐wide analysis of BCR signalosomes and downstream phosphorylation and ubiquitylation

JOURNAL ARTICLE published June 2015 in Molecular Systems Biology

Authors: Shankha Satpathy | Sebastian A Wagner | Petra Beli | Rajat Gupta | Trine A Kristiansen | Dessislava Malinova | Chiara Francavilla | Pavel Tolar | Gail A Bishop | Bruce S Hostager | Chunaram Choudhary

https://doi.org/10.15252/msb.20145880 Actions

Regulation of gene expression by small non‐coding RNAs: a quantitative view

JOURNAL ARTICLE published January 2007 in Molecular Systems Biology

Authors: Yishai Shimoni | Gilgi Friedlander | Guy Hetzroni | Gali Niv | Shoshy Altuvia | Ofer Biham | Hanah Margalit

https://doi.org/10.1038/msb4100181 Actions

Systems parasitology: effects of Fasciola hepatica on the neurochemical profile in the rat brain

JOURNAL ARTICLE published January 2010 in Molecular Systems Biology

Authors: Jasmina Saric | Jia V Li | Jürg Utzinger | Yulan Wang | Jennifer Keiser | Stephan Dirnhofer | Olaf Beckonert | Mansour T A Sharabiani | Judith M Fonville | Jeremy K Nicholson | Elaine Holmes

https://doi.org/10.1038/msb.2010.49 Actions

Environment‐specific combinatorial cis ‐regulation in synthetic promoters

JOURNAL ARTICLE published January 2009 in Molecular Systems Biology

Authors: Jason Gertz | Barak A Cohen

https://doi.org/10.1038/msb.2009.1 Actions

Constraints imposed by non‐functional protein–protein interactions on gene expression and proteome size

JOURNAL ARTICLE published January 2008 in Molecular Systems Biology

Authors: Jingshan Zhang | Sergei Maslov | Eugene I Shakhnovich

https://doi.org/10.1038/msb.2008.48 Actions

Listening to the noise: random fluctuations reveal gene network parameters

JOURNAL ARTICLE published January 2009 in Molecular Systems Biology

Authors: Brian Munsky | Brooke Trinh | Mustafa Khammash

https://doi.org/10.1038/msb.2009.75 Actions

Proteome‐scale mapping of binding sites in the unstructured regions of the human proteome

JOURNAL ARTICLE published January 2022 in Molecular Systems Biology

Research funded by Cancer Research UK (C68484/A28159) | Vetenskapsrådet (2016‐04134,2016‐04965,2020‐03380,2020‐04395)

Authors: Caroline Benz | Muhammad Ali | Izabella Krystkowiak | Leandro Simonetti | Ahmed Sayadi | Filip Mihalic | Johanna Kliche | Eva Andersson | Per Jemth | Norman E Davey | Ylva Ivarsson

https://doi.org/10.15252/msb.202110584 Actions

An integrated workflow for charting the human interaction proteome: insights into the PP2A system

JOURNAL ARTICLE published January 2009 in Molecular Systems Biology

Authors: Timo Glatter | Alexander Wepf | Ruedi Aebersold | Matthias Gstaiger

https://doi.org/10.1038/msb.2008.75 Actions

ENDORSE: a prognostic model for endocrine therapy in estrogen‐receptor‐positive breast cancers

JOURNAL ARTICLE published June 2022 in Molecular Systems Biology

Research funded by National Cancer Institute (1U54CA209978)

Authors: Aritro Nath | Adam L Cohen | Andrea H Bild

https://doi.org/10.15252/msb.202110558 Actions

Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis

JOURNAL ARTICLE published January 2012 in Molecular Systems Biology

Authors: Ming‐Jung Liu | Szu‐Hsien Wu | Ho‐Ming Chen | Shu‐Hsing Wu

https://doi.org/10.1038/msb.2011.97 Actions

Metabolic balance in colorectal cancer is maintained by optimal Wnt signaling levels

JOURNAL ARTICLE published August 2022 in Molecular Systems Biology

Research funded by Deutsche Forschungsgemeinschaft (1324) | H2020 European Research Council (810296)

Authors: Katharina Imkeller | Giulia Ambrosi | Nancy Klemm | Ainara Claveras Cabezudo | Luisa Henkel | Wolfgang Huber | Michael Boutros

https://doi.org/10.15252/msb.202110874 Actions

Lyapunov exponents and phase diagrams reveal multi‐factorial control over TRAIL‐induced apoptosis

JOURNAL ARTICLE published January 2011 in Molecular Systems Biology

Authors: Bree B Aldridge | Suzanne Gaudet | Douglas A Lauffenburger | Peter K Sorger

https://doi.org/10.1038/msb.2011.85 Actions

GPIomics: global analysis of glycosylphosphatidylinositol‐anchored molecules ofTrypanosoma cruzi

JOURNAL ARTICLE published January 2009 in Molecular Systems Biology

Authors: Ernesto S Nakayasu | Dmitry V Yashunsky | Lilian L Nohara | Ana Claudia T Torrecilhas | Andrei V Nikolaev | Igor C Almeida

https://doi.org/10.1038/msb.2009.13 Actions

Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures

JOURNAL ARTICLE published January 2013 in Molecular Systems Biology

Authors: Peter D Gould | Nicolas Ugarte | Mirela Domijan | Maria Costa | Julia Foreman | Dana MacGregor | Ken Rose | Jayne Griffiths | Andrew J Millar | Bärbel Finkenstädt | Steven Penfield | David A Rand | Karen J Halliday | Anthony J W Hall

https://doi.org/10.1038/msb.2013.7 Actions

The population context is a driver of the heterogeneous response of epithelial cells to interferons

JOURNAL ARTICLE published 25 January 2024 in Molecular Systems Biology

Research funded by Deutsche Forschungsgemeinschaft (278001972,240245660) | UF | UF Health | College of Medicine, University of Florida (start-up package,start-up package)

Authors: Camila Metz-Zumaran | Zina M Uckeley | Patricio Doldan | Francesco Muraca | Yagmur Keser | Pascal Lukas | Benno Kuropka | Leonie Küchenhoff | Soheil Rastgou Talemi | Thomas Höfer | Christian Freund | Elisabetta Ada Cavalcanti-Adam | Frederik Graw | Megan Stanifer | Steeve Boulant

https://doi.org/10.1038/s44320-024-00011-2 Actions
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