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Comparison of multiple metagenomes using phylogenetic networks based on ecological indices

JOURNAL ARTICLE published 1 October 2010 in The ISME Journal

Authors: Suparna Mitra | Jack A Gilbert | Dawn Field | Daniel H Huson

https://doi.org/10.1038/ismej.2010.51 Actions

Distinct bacterial population dynamics and disease dissemination after biofilm dispersal and disassembly

JOURNAL ARTICLE published 1 August 2023 in The ISME Journal

Authors: Yeping Ma | Yanlin Deng | Haojun Hua | Bee Luan Khoo | Song Lin Chua

https://doi.org/10.1038/s41396-023-01446-5 Actions

Antibiotic-degrading resistance changes bacterial community structure via species-specific responses

JOURNAL ARTICLE published 1 September 2023 in The ISME Journal

Research funded by Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (310030_192428) | Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (310030_192428)

Authors: Ayush Pathak | Daniel C Angst | Ricardo León-Sampedro | Alex R Hall

https://doi.org/10.1038/s41396-023-01465-2 Actions

An evidence-based framework for predicting the impact of differing autotroph-heterotroph thermal sensitivities on consumer–prey dynamics

JOURNAL ARTICLE published 1 July 2016 in The ISME Journal

Authors: Zhou Yang | Lu Zhang | Xuexia Zhu | Jun Wang | David J S Montagnes

https://doi.org/10.1038/ismej.2015.225 Actions

Syntrophic pathways for microbial mercury methylation

JOURNAL ARTICLE published 1 July 2018 in The ISME Journal

Authors: Ri-Qing Yu | John R Reinfelder | Mark E Hines | Tamar Barkay

https://doi.org/10.1038/s41396-018-0106-0 Actions

Rhizobium determinants of rhizosphere persistence and root colonisation

JOURNAL ARTICLE published 1 May 2024 in The ISME Journal

Authors: Hayley E Knights | Vinoy K Ramachandran | Beatriz Jorrin | Raphael Ledermann | Jack D Parsons | Samuel T N Aroney | Philip S Poole

https://doi.org/10.1093/ismejo/wrae072 Actions

Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions

JOURNAL ARTICLE published 1 June 2021 in The ISME Journal

Research funded by DOE | LDRD | Lawrence Berkeley National Laboratory (DE-AC02-05CH11231) | DOE | LDRD | Lawrence Berkeley National Laboratory (DE-AC02-05CH11231)

Authors: Maureen Berg | Danielle Goudeau | Charles Olmsted | Katherine D McMahon | Senay Yitbarek | Jennifer L Thweatt | Donald A Bryant | Emiley A Eloe-Fadrosh | Rex R Malmstrom | Simon Roux

https://doi.org/10.1038/s41396-020-00870-1 Actions

Physiology and behaviour of marine Thioploca

JOURNAL ARTICLE published 1 June 2009 in The ISME Journal

Authors: Signe Høgslund | Niels Peter Revsbech | J Gijs Kuenen | Bo Barker Jørgensen | Victor Ariel Gallardo | Jack Vossenberg | Jeppe Lund Nielsen | Lars Holmkvist | Esther T Arning | Lars Peter Nielsen

https://doi.org/10.1038/ismej.2009.17 Actions

Uncultured Nitrospina-like species are major nitrite oxidizing bacteria in oxygen minimum zones

JOURNAL ARTICLE published 1 October 2019 in The ISME Journal

Authors: Xin Sun | Linnea F M Kop | Maggie C Y Lau | Jeroen Frank | Amal Jayakumar | Sebastian Lücker | Bess B Ward

https://doi.org/10.1038/s41396-019-0443-7 Actions

Genomic insights into the phylogeny and biomass-degrading enzymes of rumen ciliates

JOURNAL ARTICLE published 1 December 2022 in The ISME Journal

Research funded by National Natural Science Foundation of China (31822052,31902126) | China Postdoctoral Science Foundation (2019M663841) | National Natural Science Foundation of China (31822052,31902126) | China Postdoctoral Science Foundation (2019M663841)

Authors: Zongjun Li | Xiangnan Wang | Yu Zhang | Zhongtang Yu | Tingting Zhang | Xuelei Dai | Xiangyu Pan | Ruoxi Jing | Yueyang Yan | Yangfan Liu | Shan Gao | Fei Li | Youqin Huang | Jian Tian | Junhu Yao | XvPeng Xing | Tao Shi | Jifeng Ning | Bin Yao | Huoqing Huang | Yu Jiang

https://doi.org/10.1038/s41396-022-01306-8 Actions

Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests

JOURNAL ARTICLE published 1 December 2012 in The ISME Journal

Authors: Martin Hartmann | Charles G Howes | David VanInsberghe | Hang Yu | Dipankar Bachar | Richard Christen | Rolf Henrik Nilsson | Steven J Hallam | William W Mohn

https://doi.org/10.1038/ismej.2012.84 Actions

Sunlight modulates the relative importance of heterotrophic bacteria and picophytoplankton in DMSP-sulphur uptake

JOURNAL ARTICLE published 1 March 2012 in The ISME Journal

Authors: Clara Ruiz-González | Rafel Simó | Maria Vila-Costa | Ruben Sommaruga | Josep M Gasol

https://doi.org/10.1038/ismej.2011.118 Actions

Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert

JOURNAL ARTICLE published 1 November 2019 in The ISME Journal

Research funded by National Aeronautics and Space Administration (NNX15AP18G,NNX15AK57G) | National Science Foundation (FB-0001) | U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (HG006620) | National Aeronautics and Space Administration (NNX15AP18G,NNX15AK57G) | National Science Foundation (FB-0001) | U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (HG006620)

Authors: Gherman Uritskiy | Samantha Getsin | Adam Munn | Benito Gomez-Silva | Alfonso Davila | Brian Glass | James Taylor | Jocelyne DiRuggiero

https://doi.org/10.1038/s41396-019-0468-y Actions

Bacteria on leaves: a previously unrecognised source of N2O in grazed pastures

JOURNAL ARTICLE published 1 January 2015 in The ISME Journal

Authors: Saman Bowatte | Paul C D Newton | Shona Brock | Phil Theobald | Dongwen Luo

https://doi.org/10.1038/ismej.2014.118 Actions

Lytic bacteriophage have diverse indirect effects in a synthetic cross-feeding community

JOURNAL ARTICLE published 1 January 2020 in The ISME Journal

Research funded by U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (GM121498-01A1) | U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (GM121498-01A1)

Authors: Lisa Fazzino | Jeremy Anisman | Jeremy M Chacón | Richard H Heineman | William R Harcombe

https://doi.org/10.1038/s41396-019-0511-z Actions

Demographic fluctuation of community-acquired antibiotic-resistant Staphylococcus aureus lineages: potential role of flimsy antibiotic exposure

JOURNAL ARTICLE published 1 August 2018 in The ISME Journal

Authors: Claude-Alexandre Gustave | Anne Tristan | Patricia Martins-Simões | Marc Stegger | Yvonne Benito | Paal Skytt Andersen | Michèle Bes | Typhanie Le Hir | Binh An Diep | Anne-Catrin Uhlemann | Philippe Glaser | Frédéric Laurent | Thierry Wirth | François Vandenesch

https://doi.org/10.1038/s41396-018-0110-4 Actions

Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere

JOURNAL ARTICLE published 1 June 2010 in The ISME Journal

Authors: Claudia Knief | Alban Ramette | Lisa Frances | Carlos Alonso-Blanco | Julia A Vorholt

https://doi.org/10.1038/ismej.2010.9 Actions

Endosymbionts modulate virus effects on aphid-plant interactions

JOURNAL ARTICLE published 1 December 2023 in The ISME Journal

Authors: Patricia Sanches | Consuelo M De Moraes | Mark C Mescher

https://doi.org/10.1038/s41396-023-01549-z Actions

Transitional genomes and nutritional role reversals identified for dual symbionts of adelgids (Aphidoidea: Adelgidae)

JOURNAL ARTICLE published 1 March 2022 in The ISME Journal

Research funded by National Science Foundation (DEB-1655182,DEB-1655177,DEB-1601802,DEB-1655177,DEB-1601802,DEB-1655177,DEB-1655182,DEB-1655177,DEB-1655177) | National Science Foundation (DEB-1655182,DEB-1655177,DEB-1601802)

Authors: Dustin T Dial | Kathryn M Weglarz | Akintunde O Aremu | Nathan P Havill | Taylor A Pearson | Gaelen R Burke | Carol D von Dohlen

https://doi.org/10.1038/s41396-021-01102-w Actions

Microarray analysis of phosphate regulation in the marine cyanobacterium Synechococcus sp. WH8102

JOURNAL ARTICLE published 1 July 2009 in The ISME Journal

Authors: Sasha G Tetu | Bianca Brahamsha | Daniel A Johnson | Vera Tai | Katherine Phillippy | Brian Palenik | Ian T Paulsen

https://doi.org/10.1038/ismej.2009.31 Actions
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