CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes

JOURNAL ARTICLE published 3 December 2022 in Mobile DNA

Research funded by Agence Nationale de la Recherche (ANR-17-CE20-0001)

Authors: Héléna Vassilieff | Sana Haddad | Véronique Jamilloux | Nathalie Choisne | Vikas Sharma | Delphine Giraud | Mariène Wan | Saad Serfraz | Andrew D. W. Geering | Pierre-Yves Teycheney | Florian Maumus

Christophe Terzian (1959-2016)

JOURNAL ARTICLE published December 2016 in Mobile DNA

Authors: French Network on Mobile Genetic Elements

Characterization of a functional insertion sequence ISSau2 from Staphylococcus aureus

JOURNAL ARTICLE published December 2018 in Mobile DNA

Research funded by National Natural Science Foundation of China (31372282)

Authors: Liangliang Wang | Wei Si | Huping Xue | Xin Zhao

Deciphering fact from artifact when using reporter assays to investigate the roles of host factors on L1 retrotransposition

JOURNAL ARTICLE published December 2016 in Mobile DNA

Authors: Pamela R. Cook | G. Travis Tabor

Correction to: Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements

JOURNAL ARTICLE published December 2019 in Mobile DNA

Authors: Nicky Chung | G. M. Jonaid | Sophia Quinton | Austin Ross | Corinne E. Sexton | Adrian Alberto | Cody Clymer | Daphnie Churchill | Omar Navarro Leija | Mira V. Han

Correction to: Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study

JOURNAL ARTICLE published December 2020 in Mobile DNA

Authors: Pavel Jedlicka | Matej Lexa | Ivan Vanat | Roman Hobza | Eduard Kejnovsky

Analysis of antibiotic resistance gene cassettes in a newly identified Salmonella enterica serovar Gallinarum strain in Korea

JOURNAL ARTICLE published 24 April 2023 in Mobile DNA

Research funded by National Research Foundation of Korea (No. 2020R1A5A2031185,No. 2020R1A5A2031185,No. 2020R1A5A2031185,No. 2020R1A5A2031185,No. 2020R1A5A2031185,No. 2020R1A5A2031185)

Authors: Thanh Quang Tran | Minyoung Park | Jong Eun Lee | Soo Hyun Kim | Jae-Ho Jeong | Hyon E. Choy

Unbiased proteomic mapping of the LINE-1 promoter using CRISPR Cas9

JOURNAL ARTICLE published December 2021 in Mobile DNA

Research funded by National Institutes of Health (R01CA112226,F31CA225053-01A1,P01AG051449,R21CA235521,R01GM127267)

Authors: Erica M. Briggs | Paolo Mita | Xiaoji Sun | Susan Ha | Nikita Vasilyev | Zev R. Leopold | Evgeny Nudler | Jef D. Boeke | Susan K. Logan

Targeted identification of TE insertions in a Drosophila genome through hemi-specific PCR

JOURNAL ARTICLE published December 2017 in Mobile DNA

Research funded by Division of Environmental Biology (1457800)

Authors: Shuo Zhang | Erin S. Kelleher

NucBase, an easy to use read mapper for small RNAs

JOURNAL ARTICLE published December 2013 in Mobile DNA

Authors: Jeremy Dufourt | Pierre Pouchin | Pierre Peyret | Emilie Brasset | Chantal Vaury

Integrating transposable elements in the 3D genome

JOURNAL ARTICLE published December 2020 in Mobile DNA

Research funded by The Royal Society (UF160138) | The Royal Society (UF160222) | European Cooperation in Science and Technology (CA17139)

Authors: Alexandros Bousios | Hans-Wilhelm Nützmann | Dorothy Buck | Davide Michieletto

AluMine: alignment-free method for the discovery of polymorphic Alu element insertions

JOURNAL ARTICLE published December 2019 in Mobile DNA

Research funded by Eesti Teadusagentuur (IUT34-11) | European Regional Development Fund (No. 2014-2020.4.01.15-0012)

Authors: Tarmo Puurand | Viktoria Kukuškina | Fanny-Dhelia Pajuste | Maido Remm

Copy number variation of ribosomal DNA and Pokey transposons in natural populations of Daphnia

JOURNAL ARTICLE published 2012 in Mobile DNA

Authors: Shannon HC Eagle | Teresa J Crease

Bridging gaps in transposable element research with single-molecule and single-cell technologies

JOURNAL ARTICLE published December 2018 in Mobile DNA

Research funded by Vetenskapsrådet (2018-00767) | Wenner-Gren Foundation (ESv2018-0014)

Authors: Claudia Kutter | Patric Jern | Alexander Suh

Jerzy Jurka: June 4, 1950 – July 19, 2014

JOURNAL ARTICLE published 2015 in Mobile DNA

Authors: Elzbieta Jurka

Mobile DNA and the TE-Thrust hypothesis: supporting evidence from the primates

JOURNAL ARTICLE published 2011 in Mobile DNA

Authors: Keith R Oliver | Wayne K Greene

Different integration site structures between L1 protein-mediated retrotransposition in cis and retrotransposition in trans

JOURNAL ARTICLE published 2010 in Mobile DNA

Authors: Kenji K Kojima

Evolution of a transposon in Daphnia hybrid genomes

JOURNAL ARTICLE published December 2013 in Mobile DNA

Authors: Roland Vergilino | Tyler A Elliott | Philippe Desjardins-Proulx | Teresa J Crease | France Dufresne

Genome-wide comparison of Asian and African rice reveals high recent activity of DNA transposons

JOURNAL ARTICLE published December 2015 in Mobile DNA

Authors: Stefan Roffler | Thomas Wicker

Impact of ploidy level on the distribution of Pokey element insertions in the Daphnia pulex complex

JOURNAL ARTICLE published 2014 in Mobile DNA

Authors: Roland Vergilino | Shannon HC Eagle | Teresa J Crease | France Dufresne