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Investigating a holobiont: Microbiota perturbations and transkingdom networks

JOURNAL ARTICLE published 3 March 2016 in Gut Microbes

Authors: Renee Greer | Xiaoxi Dong | Andrey Morgun | Natalia Shulzhenko

Acute necrotizing enterocolitis of preterm piglets is characterized by dysbiosis of ileal mucosa-associated bacteria

JOURNAL ARTICLE published July 2011 in Gut Microbes

Authors: M. Andrea Azcarate-Peril | Derek M. Foster | Maria B. Cadenas | Maria R. Stone | Sheila K. Jacobi | Stephen H. Stauffer | Anthony Pease | Jody L. Gookin

In this issue ofGut Microbes

JOURNAL ARTICLE published January 2014 in Gut Microbes

Authors: Brian MM Ahmer

Pasteurized Akkermansia muciniphila improves irritable bowel syndrome-like symptoms and related behavioral disorders in mice

JOURNAL ARTICLE published 31 December 2024 in Gut Microbes

Research funded by Walloon Region (agreement 8206) | Ministère de la Recherche et de la Technologie (INSERM 1107) | Region Auvergne-Rhône-Alpes and FEDER (Thématiques émergentes)

Authors: Maëva Meynier | Valentine Daugey | Geoffroy Mallaret | Sandie Gervason | Mathieu Meleine | Julie Barbier | Youssef Aissouni | Stéphane Lolignier | Mathilde Bonnet | Denis Ardid | Willem M. De Vos | Matthias Van Hul | Peter Suenaert | Amandine Brochot | Patrice D. Cani | Frédéric A. Carvalho

Rural environment reduces allergic inflammation by modulating the gut microbiota

JOURNAL ARTICLE published 31 December 2022 in Gut Microbes

Authors: Zhaowei Yang | Zhong Chen | Xinliu Lin | Siyang Yao | Mo Xian | Xiaoping Ning | Wanyi Fu | Mei Jiang | Naijian Li | Xiaojun Xiao | Mulin Feng | Zexuan Lian | Wenqing Yang | Xia Ren | Zhenyu Zheng | Jiefeng Zhao | Nili Wei | Wenju Lu | Marjut Roponen | Bianca Schaub | Gary W. K. Wong | Zhong Su | Charles Wang | Jing Li

Reprofiled drug targets ancient protozoans

JOURNAL ARTICLE published January 2013 in Gut Microbes

Authors: Anjan Debnath | Momar Ndao | Sharon L. Reed

Multiomic spatial analysis reveals a distinct mucosa-associated virome

JOURNAL ARTICLE published 31 December 2023 in Gut Microbes

Research funded by Canadian Institutes of Health Research (ECD-144627) | Genome Canada (OGI-149) | Ontario Ministry of Research and Innovation (Project 13440) | Frederick Banting and Charles Best (Scholarship) | Faculty of Medicine, University of Ottawa (Distinguished Clinical Chair)

Authors: Austin Yan | James Butcher | Laetitia Schramm | David R. Mack | Alain Stintzi

Intestinal group 1 innate lymphoid cells drive macrophage-induced inflammation and endocrine defects in obesity and promote insulinemia

JOURNAL ARTICLE published 31 December 2023 in Gut Microbes

Research funded by the Spanish Ministry of Science and Innovation ((grant PID2020-119536RB-I00)) | Spanish Ministry of Universities ((PFU 18/02026)) | a Marie Sklodowska Curie Actions (MSCA-IF) ”MicroILCs” ((GA: 8905454)) | Spanish Ministry of Science and Innovation (MCIN/AEI) of Center of Excellence Accreditation Severo Ochoa ((CEX2021-001189-S/ MCIN/AEI / 10.13039/501100011033))

Authors: Rebeca Liébana-García | Marta Olivares | Carlos Francés-Cuesta | Teresa Rubio | Valerio Rossini | Guillermo Quintas | Yolanda Sanz

Short-term mucosal disruption enables colibactin-producing E. coli to cause long-term perturbation of colonic homeostasis

JOURNAL ARTICLE published 31 December 2023 in Gut Microbes

Authors: Christine Harnack | Hilmar Berger | Lichao Liu | Hans-Joachim Mollenkopf | Till Strowig | Michael Sigal

Oxygen concentration modulates colibactin production

JOURNAL ARTICLE published 31 December 2023 in Gut Microbes

Research funded by French Agence Nationale de la Recherche (ANR-17-CE35-0010, ANR-18-CE14-0039, ANR-19-CE34-0014)

Authors: Nadège Bossuet | Cécile Guyonnet | Camille V Chagneau | Min Tang-Fichaux | Marie Penary | Dorian Loubet | Priscilla Branchu | Eric Oswald | Jean-Philippe Nougayrede

An insect gut environment reveals the induction of a new sugar-phosphate sensor system inBacillus cereus

JOURNAL ARTICLE published January 2014 in Gut Microbes

Authors: Fuping Song | Qi Peng | Julien Brillard | Didier Lereclus | Christina Nielsen-LeRoux

Collateral damage during antibiotic treatment ofC. difficileinfection in the aged host: Insights into why recurrent disease happens

JOURNAL ARTICLE published 3 September 2017 in Gut Microbes

Authors: Jae Hyun Shin | Cirle A. Warren

Opioid-induced dysbiosis of maternal gut microbiota during gestation alters offspring gut microbiota and pain sensitivity

JOURNAL ARTICLE published 31 December 2024 in Gut Microbes

Authors: Yaa F. Abu | Salma Singh | Junyi Tao | Irina Chupikova | Praveen Singh | Jingjing Meng | Sabita Roy

Cytolethal distending toxin B inoculation leads to distinct gut microtypes and IBS-D-like microRNA-mediated gene expression changes in a rodent model

JOURNAL ARTICLE published 31 December 2024 in Gut Microbes

Authors: Gabriela Leite | Juliana de Freitas Germano | Walter Morales | Stacy Weitsman | Gillian M Barlow | Gonzalo Parodi | Maya L Pimentel | Maria Jesus Villanueva-Millan | Maritza Sanchez | Sarah Ayyad | Ali Rezaie | Ruchi Mathur | Mark Pimentel

Dysbiosis in the inflamed intestine

JOURNAL ARTICLE published January 2014 in Gut Microbes

Authors: Sebastian E Winter | Andreas J Bäumler

COVID-19 and the neonatal microbiome: will the pandemic cost infants their microbes?

JOURNAL ARTICLE published 1 January 2021 in Gut Microbes

Research funded by U.S. National Institutes of Health (NIDDK R01 DK105118,R01DK114126,DOD BC160450P1)

Authors: Joann Romano-Keeler | Jilei Zhang | Jun Sun

Methodological challenges in neonatal microbiome research

JOURNAL ARTICLE published 31 December 2023 in Gut Microbes

Research funded by Royal Society (221745/Z/20/Z)

Authors: Jonathan A Chapman | Christopher J Stewart

Butyrate reduces adherent-invasive E. coli -evoked disruption of epithelial mitochondrial morphology and barrier function: involvement of free fatty acid receptor 3

JOURNAL ARTICLE published 18 December 2023 in Gut Microbes

Authors: Samira A. Hamed | Armaan Mohan | Saranya Navaneetha Krishnan | Arthur Wang | Marija Drikic | Nicole L. Prince | Ian A. Lewis | Jane Shearer | Åsa V. Keita | Johan D. Söderholm | Timothy E. Shutt | Derek M. McKay

Gut non-bacterial microbiota contributing to alcohol-associated liver disease

JOURNAL ARTICLE published 1 January 2021 in Gut Microbes

Research funded by National Natural Science Foundation of China (81770582 to JY and 82000561 to HKC)

Authors: Wenkang Gao | Yixin Zhu | Jin Ye | Huikuan Chu

Host-mycobiome metabolic interactions in health and disease

JOURNAL ARTICLE published 31 December 2022 in Gut Microbes

Research funded by Biotechnology and Biological Sciences Research Council (BB/S016899/1) | Engineering and Physical Sciences Research Council (EP/S001301/1)

Authors: Neelu Begum | Azadeh Harzandi | Sunjae Lee | Mathias Uhlen | David L. Moyes | Saeed Shoaie