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Biophysical properties at patch scale shape the metabolism of biofilm landscapes

JOURNAL ARTICLE published 3 February 2022 in npj Biofilms and Microbiomes

Authors: Anna Depetris | Giorgia Tagliavini | Hannes Peter | Michael Kühl | Markus Holzner | Tom J. Battin

https://doi.org/10.1038/s41522-022-00269-0 Actions

Discovery of potential genes contributing to the biosynthesis of short-chain fatty acids and lactate in gut microbiota from systematic investigation in E. coli

JOURNAL ARTICLE published 12 July 2019 in npj Biofilms and Microbiomes

Research funded by National Natural Science Foundation of China (31470231, 31670048, 31870038) | Youth Innovation Promotion Association of the Chinese Academy of Sciences (2014076)

Authors: Chunhua Zhao | Hongjun Dong | Yanping Zhang | Yin Li

https://doi.org/10.1038/s41522-019-0092-7 Actions

Staphylococcus aureus utilizes environmental RNA as a building material in specific polysaccharide-dependent biofilms

JOURNAL ARTICLE published 4 April 2022 in npj Biofilms and Microbiomes

Research funded by MEXT | Japan Society for the Promotion of Science (JP5H05619,JP20H02904) | MEXT | JST | Exploratory Research for Advanced Technology (JPMJER1502)

Authors: Akio Chiba | Masahide Seki | Yutaka Suzuki | Yuki Kinjo | Yoshimitsu Mizunoe | Shinya Sugimoto

https://doi.org/10.1038/s41522-022-00278-z Actions

Advantages of meta-total RNA sequencing (MeTRS) over shotgun metagenomics and amplicon-based sequencing in the profiling of complex microbial communities

JOURNAL ARTICLE published 18 January 2018 in npj Biofilms and Microbiomes

Authors: Fabien Cottier | Kandhadayar Gopalan Srinivasan | Marina Yurieva | Webber Liao | Michael Poidinger | Francesca Zolezzi | Norman Pavelka

https://doi.org/10.1038/s41522-017-0046-x Actions

Rationally designed probiotics prevent shrimp white feces syndrome via the probiotics–gut microbiome–immunity axis

JOURNAL ARTICLE published 11 April 2024 in npj Biofilms and Microbiomes

Research funded by National Natural Science Foundation of China (32071549, 32371596)

Authors: Haonan Sha | Jiaqi Lu | Jiong Chen | Jinbo Xiong

https://doi.org/10.1038/s41522-024-00509-5 Actions

Body weight index indicates the responses of the fecal microbiota, metabolome and proteome to beef/chicken-based diet alterations in Chinese volunteers

JOURNAL ARTICLE published 12 July 2022 in npj Biofilms and Microbiomes

Authors: Di Zhao | Kai Shan | Yunting Xie | Guanghong Zhang | Qi An | Xiaobo Yu | Guanghong Zhou | Chunbao Li

https://doi.org/10.1038/s41522-022-00319-7 Actions

Bacteria differently deploy type-IV pili on surfaces to adapt to nutrient availability

JOURNAL ARTICLE published 24 February 2016 in npj Biofilms and Microbiomes

Authors: Lei Ni | Shuai Yang | Rongrong Zhang | Zhenyu Jin | Hao Chen | Jacinta C Conrad | Fan Jin

https://doi.org/10.1038/npjbiofilms.2015.29 Actions

Akkermansia muciniphila inhibited the periodontitis caused by Fusobacterium nucleatum

JOURNAL ARTICLE published 17 July 2023 in npj Biofilms and Microbiomes

Authors: Bingqing Song | Wenpan Xian | Yan Sun | Lichen Gou | Qiang Guo | Xuedong Zhou | Biao Ren | Lei Cheng

https://doi.org/10.1038/s41522-023-00417-0 Actions

Supporting the strategic pillars of translational research in biofilms

JOURNAL ARTICLE published 13 November 2022 in npj Biofilms and Microbiomes

Authors: Miguel Camara | Alain Filloux

https://doi.org/10.1038/s41522-022-00354-4 Actions

Developmental intestinal microbiome alterations in canine fading puppy syndrome: a prospective observational study

JOURNAL ARTICLE published 23 June 2021 in npj Biofilms and Microbiomes

Authors: Smadar Tal | Evgenii Tikhonov | Itamar Aroch | Lior Hefetz | Sondra Turjeman | Omry Koren | Sharon Kuzi

https://doi.org/10.1038/s41522-021-00222-7 Actions

Spatiotemporal bio-shielding of bacteria through consolidated geometrical structuring

JOURNAL ARTICLE published 9 May 2022 in npj Biofilms and Microbiomes

Authors: Satish Kumar Rajasekharan | Moshe Shemesh

https://doi.org/10.1038/s41522-022-00302-2 Actions

Genome-wide siRNA screening reveals several host receptors for the binding of human gut commensal Bifidobacterium bifidum

JOURNAL ARTICLE published 29 June 2022 in npj Biofilms and Microbiomes

Authors: Veera Kainulainen | Carina von Schantz-Fant | Ruusu-Maria Kovanen | Swapnil Potdar | Karoliina Laamanen | Jani Saarela | Reetta Satokari

https://doi.org/10.1038/s41522-022-00312-0 Actions

Linkages between oral commensal bacteria and atherosclerotic plaques in coronary artery disease patients

JOURNAL ARTICLE published 19 December 2016 in npj Biofilms and Microbiomes

Authors: Jyoti Chhibber-Goel | Varsha Singhal | Debaleena Bhowmik | Rahul Vivek | Neeraj Parakh | Balram Bhargava | Amit Sharma

https://doi.org/10.1038/s41522-016-0009-7 Actions

Treatment with Anaerobutyricum soehngenii: a pilot study of safety and dose–response effects on glucose metabolism in human subjects with metabolic syndrome

JOURNAL ARTICLE published 27 March 2020 in npj Biofilms and Microbiomes

Authors: Pim W. Gilijamse | Annick V. Hartstra | Evgeni Levin | Koen Wortelboer | Mireille J. Serlie | Mariette T. Ackermans | Hilde Herrema | Aart J. Nederveen | Sultan Imangaliyev | Steven Aalvink | Morton Sommer | Han Levels | Erik S. G. Stroes | Albert K. Groen | Marleen Kemper | Willem M. de Vos | Max Nieuwdorp | Andrei Prodan

https://doi.org/10.1038/s41522-020-0127-0 Actions

Bacteroides ovatus accelerates metformin-induced vitamin B12 deficiency in type 2 diabetes patients by accumulating cobalamin

JOURNAL ARTICLE published 24 July 2023 in npj Biofilms and Microbiomes

Authors: Manyun Chen | Yan Shu | Qing Li | Zhiqiang Kang | Tao Liu | Honghao Zhou | Weihua Huang | Wei Zhang

https://doi.org/10.1038/s41522-023-00419-y Actions

Long-term intake of Lactobacillus helveticus enhances bioavailability of omega-3 fatty acids in the mouse retina

JOURNAL ARTICLE published 18 January 2024 in npj Biofilms and Microbiomes

Research funded by Agence Nationale de la Recherche (ANR-11-LABX-0021-01,ANR-15-IDEX-0003)

Authors: Pierre Lapaquette | Sébastien Terrat | Lil Proukhnitzky | Lucy Martine | Stéphane Grégoire | Bénédicte Buteau | Stéphanie Cabaret | Aurélie Rieu | Luis G. Bermúdez-Humarán | Pierre-Henry Gabrielle | Catherine Creuzot-Garcher | Olivier Berdeaux | Niyazi Acar | Marie-Agnès Bringer

https://doi.org/10.1038/s41522-023-00474-5 Actions

Arabinoxylans, inulin and Lactobacillus reuteri 1063 repress the adherent-invasive Escherichia coli from mucus in a mucosa-comprising gut model

JOURNAL ARTICLE published 27 July 2016 in npj Biofilms and Microbiomes

Authors: Pieter Van den Abbeele | Massimo Marzorati | Melanie Derde | Rosemarie De Weirdt | Vermeiren Joan | Sam Possemiers | Tom Van de Wiele

https://doi.org/10.1038/npjbiofilms.2016.16 Actions

Sucrose addition directionally enhances bacterial community convergence and network stability of the shrimp culture system

JOURNAL ARTICLE published 11 April 2022 in npj Biofilms and Microbiomes

Research funded by National Natural Science Foundation of China (31672658)

Authors: Haipeng Guo | Pengsheng Dong | Fan Gao | Lei Huang | Sipeng Wang | Ruoyu Wang | Mengchen Yan | Demin Zhang

https://doi.org/10.1038/s41522-022-00288-x Actions

Hydrodynamic conditions affect the proteomic profile of marine biofilms formed by filamentous cyanobacterium

JOURNAL ARTICLE published 17 October 2022 in npj Biofilms and Microbiomes

Authors: Maria J. Romeu | Dany Domínguez-Pérez | Daniela Almeida | João Morais | Mário J. Araújo | Hugo Osório | Alexandre Campos | Vítor Vasconcelos | Filipe J. Mergulhão

https://doi.org/10.1038/s41522-022-00340-w Actions

Enrichment of milk with magnesium provides healthier and safer dairy products

JOURNAL ARTICLE published 11 October 2017 in npj Biofilms and Microbiomes

Authors: Noa Ben-Ishay | Hilla Oknin | Doron Steinberg | Zipi Berkovich | Ram Reifen | Moshe Shemesh

https://doi.org/10.1038/s41522-017-0032-3 Actions
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