A9 HIV subtype diversity across geography and transmission groups in Maryland

JOURNAL ARTICLE published 1 April 2018 in Virus Evolution

Authors: D German | S Lamers | R Rose | H Boykin | O Laeyendecker | C Flynn

A19 Genetic markers for protease inhibitor drug resistance in regions outside of the protease gene

JOURNAL ARTICLE published March 2017 in Virus Evolution

Authors: J. Giandhari | M. Gordon | C. van Vuuren | P. Moodley | T. de Oliveira

Parallel evolution and enhanced virulence upon in vivo passage of an RNA virus in Drosophila melanogaster

JOURNAL ARTICLE published 29 December 2023 in Virus Evolution

Authors: Oscar M Lezcano | Lara Fuhrmann | Gayatri Ramakrishnan | Niko Beerenwinkel | Martijn A Huynen | Ronald P van Rij

Genomic evolution, transmission dynamics, and pathogenicity of avian influenza A (H5N8) viruses emerging in China, 2020

JOURNAL ARTICLE published 20 January 2021 in Virus Evolution

Authors: Jiahao Zhang | Xudong Li | Xiaomin Wang | Hejia Ye | Bo Li | Yiqun Chen | Junhong Chen | Tao Zhang | Ziwen Qiu | Huanan Li | Weixin Jia | Ming Liao | Wenbao Qi

A20 Deep sequencing reveals viral evolution in GAG within protective HLA Alleles B*57: 02, B*58: 01, and B*7 supertype individuals acutely infected with HIV-1 subtype C in Durban, South Africa

JOURNAL ARTICLE published 1 April 2018 in Virus Evolution

Authors: K Gounder | V Naidoo | N Padayachi | Q Mthethwa | D Dilernia | E Hunter | B Walker | T Ndung’u

A24 Role of phylogenetic analysis in epidemiological case definitions during an outbreak of HIV-1 in people who inject drugs in Ireland

JOURNAL ARTICLE published 1 April 2018 in Virus Evolution

Authors: L Dunford | A Waters | M Neary | J Dean | C Giese | D Igoe | C Hurley | K O’Donnell | M Fitzgerald | C De Gascun | the HIV Epidemiology Subgroup

Comparing patterns and scales of plant virus phylogeography: Rice yellow mottle virus in Madagascar and in continental Africa

JOURNAL ARTICLE published 1 July 2019 in Virus Evolution

Research funded by French National Research Agency as an ‘Investissements d’Avenir’ (ANR-10-LABX-001-01) | Fonds voor Wetenschappelijk Onderzoek—Vlaanderen (G066215N,G0D5117N,G0B9317N)

Authors: Mbolarinosy Rakotomalala | Bram Vrancken | Agnès Pinel-Galzi | Perle Ramavovololona | Eugénie Hébrard | Jean Stéphan Randrianangaly | Simon Dellicour | Philippe Lemey | Denis Fargette

Avian and serpentine endogenous foamy viruses, and new insights into the macroevolutionary history of foamy viruses

JOURNAL ARTICLE published 1 January 2020 in Virus Evolution

Authors: Pakorn Aiewsakun

Impacts and shortcomings of genetic clustering methods for infectious disease outbreaks

JOURNAL ARTICLE published July 2016 in Virus Evolution

Authors: Art F. Y. Poon

Rapid Sequencing of CompleteenvGenes from Primary HIV-1 Samples

JOURNAL ARTICLE published July 2016 in Virus Evolution

Authors: Melissa Laird Smith | Ben Murrell | Kemal Eren | Caroline Ignacio | Elise Landais | Steven Weaver | Pham Phung | Colleen Ludka | Lance Hepler | Gemma Caballero | Tristan Pollner | Yan Guo | Douglas Richman | Pascal Poignard | Ellen E. Paxinos | Sergei L. Kosakovsky Pond | Davey M. Smith | The IAVI Protocol C Investigators & The IAVI African HIV Research Network

A21 Retrospectively describing hepatitis C virus transmission dynamics and tracking HCV transmission networks in real-time for strategic elimination interventions

JOURNAL ARTICLE published 1 August 2019 in Virus Evolution

Authors: J Koopsen | C Russell | M van der Valk | J Schinkel

Corrigendum to: Genomic epidemiology reveals the reduction of the introduction and spread of SARS-CoV-2 after implementing control strategies in Republic of Korea, 2020

JOURNAL ARTICLE published 16 December 2021 in Virus Evolution

Authors: Jung-Hoon Kwon | Jeong-Min Kim | Dong-Hun Lee | Ae Kyung Park | Il-Hwan Kim | Da-Won Kim | Ji-Yun Kim | Noori Lim | Kyeong-Yeon Cho | Heui Man Kim | Nam-Joo Lee | SangHee Woo | Chae Young Lee | Jin Sun No | Junyoung Kim | JeeEun Rhee | Myung-Guk Han | Gi-Eun Rhie | Cheon Kwon Yoo | Eun-Jin Kim

Determinants of dengue virus dispersal in the Americas

JOURNAL ARTICLE published 1 July 2020 in Virus Evolution

Research funded by National Institute of Allergy and Infectious Diseases of the National Institutes of Health (R01AI153433)

Authors: Orchid M Allicock | Nikita Sahadeo | Philippe Lemey | Albert J Auguste | Marc A Suchard | Andrew Rambaut | Christine V F Carrington

A38 Prevalence and evolution of avian H1 subtype influenza A viruses in Southern China

JOURNAL ARTICLE published 1 April 2018 in Virus Evolution

Authors: Zhihua Ou | Huachen Zhu | Yi Guan

Modeling the therapeutic potential of defective interfering particles in the presence of immunity

JOURNAL ARTICLE published 5 July 2022 in Virus Evolution

Authors: Bandita Karki | James J Bull | Stephen M Krone

Reekeekee- and roodoodooviruses, two different Microviridae clades constituted by the smallest DNA phages

JOURNAL ARTICLE published 21 January 2023 in Virus Evolution

Research funded by Office of Science of the U.S. Department of Energy (Contract No. DE-AC02-05CH11231) | EUed Horizon 2020 Framework Programme for Research and Innovation ‘Virus-X’ (685778)

Authors: Eric Olo Ndela | Simon Roux | Christian Henke | Alexander Sczyrba | Télesphore Sime Ngando | Arvind Varsani | François Enault

Properties and abundance of overlapping genes in viruses

JOURNAL ARTICLE published 1 January 2020 in Virus Evolution

Research funded by ARC Australian Laureate Fellow (FL170100022)

Authors: Timothy E Schlub | Edward C Holmes

Viral attenuation by engineered protein fragmentation

JOURNAL ARTICLE published 1 January 2018 in Virus Evolution

Authors: Daniel J Garry | Andrew D Ellington | Ian J Molineux | James J Bull

The evolutionary dynamics and epidemiological history of hepatitis C virus genotype 6, including unique strains from the Li community of Hainan Island, China

JOURNAL ARTICLE published 15 March 2022 in Virus Evolution

Research funded by National Natural Science Foundation of China (32000666) | National Natural Science Foundation of China (81772208) | Guangdong Basic and Applied Basic Research Foundation (2020A1515010118) | UK Medical Research Council (MC_UU_12014/1) | UK Medical Research Council (MC_UU_12014/12)

Authors: Ru Xu | Elihu Aranday-Cortes | E Carol McWilliam Leitch | Joseph Hughes | Joshua B Singer | Vattipally Sreenu | Lily Tong | Ana da Silva Filipe | Connor G G Bamford | Xia Rong | Jieting Huang | Min Wang | Yongshui Fu | John McLauchlan

Synergetic association between coxsackievirus A16 genotype evolution and recombinant form shifts

JOURNAL ARTICLE published 16 January 2024 in Virus Evolution

Research funded by National Key Research and Development Project (2021YFC2302003) | Capital’s Funds for Health Improvement and Research (Shoufa 2022-4G-1133 shoufa-1G-1131) | National Key Research and Development Project (2021YFC2302003) | Capital’s Funds for Health Improvement and Research (Shoufa 2022-4G-1133 shoufa-1G-1131)

Authors: Zhenzhi Han | Fangming Wang | Jinbo Xiao | Hanhaoyu Fu | Yang Song | Mingli Jiang | Huanhuan Lu | Jichen Li | Yanpeng Xu | Runan Zhu | Yong Zhang | Linqing Zhao