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Determinants of taxonomic composition of plant viruses at the Nature Conservancy’s Tallgrass Prairie Preserve, Oklahoma JOURNAL ARTICLE published 2015 in Virus Evolution |
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A56 Evolutionary analyses of foot-and-mouth disease virus in Southeast Asia using whole-genome sequences JOURNAL ARTICLE published 1 April 2018 in Virus Evolution |
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Rising prevalence of non-B HIV-1 subtypes in North Carolina and evidence for local onward transmission JOURNAL ARTICLE published January 2017 in Virus Evolution |
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A28 Frequent co-infection among human group a rotaviruses in Thailand JOURNAL ARTICLE published March 2017 in Virus Evolution |
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A17 Transmitted drug-resistant mutations among recently infected HIV-1 patients in Israel, 2000–2014 JOURNAL ARTICLE published 1 April 2018 in Virus Evolution |
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A20 Sample preparation for whole-genome next-generation sequencing (NGS) of hepatitis C virus (HCV) routine RNA samples JOURNAL ARTICLE published 1 August 2019 in Virus Evolution |
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Santa Fe Institute Workshop Special Issue articles JOURNAL ARTICLE published 1 July 2019 in Virus Evolution |
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A60 Revealing the evolution of virulence in RNA viruses JOURNAL ARTICLE published 1 August 2019 in Virus Evolution |
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Identifying predictors of time-inhomogeneous viral evolutionary processes JOURNAL ARTICLE published July 2016 in Virus Evolution |
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A21 Evolvability of HIV-1 is influenced by codon pair usage JOURNAL ARTICLE published 1 April 2018 in Virus Evolution |
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A39 Reconstruction of Ebola chains of transmission using sequence and epidemiological data JOURNAL ARTICLE published 1 August 2019 in Virus Evolution |
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Molecular epidemiology of peste des petits ruminants virus emergence in critically endangered Mongolian saiga antelope and other wild ungulates JOURNAL ARTICLE published 16 December 2021 in Virus Evolution Research funded by Royal Society (RSG\R1\180209) | Wellcome Trust (220414/Z/20/Z) | European Commission Directorate General for Health and Food Safety (SI2.756606) | European Commission Directorate General for Health and Food Safety (SI2.756606) |
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Novel genome sequences of cell-fusing agent virus allow comparison of virus phylogeny with the genetic structure of Aedes aegypti populations JOURNAL ARTICLE published 1 January 2020 in Virus Evolution |
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A42 Next-generation sequencing to analyze multiple-strain infections, genotype distribution, and antiviral resistance in hematopoietic stem cell transplantation recipients with human cytomegalovirus infection JOURNAL ARTICLE published 1 August 2019 in Virus Evolution |
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Viral community composition of hypersaline lakes JOURNAL ARTICLE published 9 September 2023 in Virus Evolution Research funded by Australian Research Council (DP150100244 FL170100022) | Australian Antarctic Science Program Project (4031) | Australian Research Council (DP150100244 FL170100022) | Australian Antarctic Science Program Project (4031) |
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Divergence dating using mixed effects clock modelling: An application to HIV-1 JOURNAL ARTICLE published 1 July 2019 in Virus Evolution |
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A14 Ultra-wide and ultra-deep sequencing increases the detection rate of dual HIV-1 infections and recombinants JOURNAL ARTICLE published 1 April 2018 in Virus Evolution |
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A new perspective on the evolution and diversity of the genus Amdoparvovirus (family Parvoviridae) through genetic characterization, structural homology modeling, and phylogenetics JOURNAL ARTICLE published 29 June 2022 in Virus Evolution Research funded by NIH (P41-GM103311) |
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Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal JOURNAL ARTICLE published 25 April 2022 in Virus Evolution Research funded by Fonds voor Wetenschappelijk Onderzoek (G098321N - to SD and GB) | Fonds voor Wetenschappelijk Onderzoek (G0E1420N - to GB) | Fonds voor Wetenschappelijk Onderzoek (doctoral (1S31916N) - to PL) | Fonds voor Wetenschappelijk Onderzoek (post-doctoral grant (#1242021N) - to PL) | Fonds voor Wetenschappelijk Onderzoek (postdoctoral grant - to KT) | Internal Fondsen KU Leuven/Internal Funds KU Leuven (C14/18/094 - to BP and GB) | Flemish Government ("Onderzoeksprogramma Artificiele Intelligentie (AI) | Fundação para a Ciência e a Tecnologia (CEECINST/00102/2018- to SGS) | Fundação para a Ciência e a Tecnologia (GHTM-UID/04413/2020) | Fundação para a Ciência e a Tecnologia (contrato-programa 1567 - to SGS) | Fonds de la Recherche Scientifique (to SD) | European Union’s Horizon 2020 research and innovation program ZIKAlliance (Agreement No 734548) | Research council of the Vrije Universiteit Brussel (OZR3863BOF) |
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Evolution of transient RNA structure–RNA polymerase interactions in respiratory RNA virus genomes JOURNAL ARTICLE published 9 September 2023 in Virus Evolution Research funded by Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases (R01 AI170520 R21 AI147172) | Wellcome Trust (206579/17/Z) | NIH Office of the Director (DP2 AI175474) | Division of Microbiology and Infectious Diseases, National Institute of Allergy and Infectious Diseases (R01 AI170520 R21 AI147172) | Wellcome Trust (206579/17/Z) | NIH Office of the Director (DP2 AI175474) |