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yggdrasil: a Python package for integrating computational models across languages and scales JOURNAL ARTICLE published 1 January 2019 in in silico Plants Research funded by Foundation for Food and Agriculture Research (515760) | Gordon and Betty Moore Foundation (GBMF4561) |
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Soybean-BioCro: a semi-mechanistic model of soybean growth JOURNAL ARTICLE published 1 January 2022 in in silico Plants Research funded by Foundation for Food and Agriculture Research (602757) | Bill and Melinda Gates Foundation (OPP1172157) | UK Foreign, Commonwealth and Development Office (OPP1172157) |
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Informative community structure revealed using Arabidopsis time series transcriptome data via partitioned local depth JOURNAL ARTICLE published 1 January 2024 in in silico Plants Research funded by National Science Foundation (MCB 1716279) |
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Yield dissection models to improve yield: a case study in tomato JOURNAL ARTICLE published 1 January 2021 in in silico Plants |
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Phloem anatomy restricts root system architecture development: theoretical clues from in silico experiments JOURNAL ARTICLE published 1 July 2023 in in silico Plants |
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Polar auxin transport dynamics of primary and secondary vein patterning in dicot leaves JOURNAL ARTICLE published 1 July 2021 in in silico Plants |
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Integrating genomic prediction and genotype specific parameter estimation in ecophysiological models: overview and perspectives JOURNAL ARTICLE published 1 January 2023 in in silico Plants |
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Biological reality and parsimony in crop models—why we need both in crop improvement! JOURNAL ARTICLE published 1 January 2019 in in silico Plants |
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Within- and cross-species predictions of plant specialized metabolism genes using transfer learning JOURNAL ARTICLE published 1 January 2020 in in silico Plants Research funded by National Science Foundation (IOS-1546617,IOS-1811055,DEB-1655386) | National Institutes of Health (T32-GM110523) | U.S. Department of Energy Great Lakes Bioenergy Research Center (DE-SC0018409) | National Institute of Food and Agriculture (MICL02552) |
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Bottom-up multiscale modelling of guard cell walls reveals molecular mechanisms of stomatal biomechanics JOURNAL ARTICLE published 1 July 2023 in in silico Plants |
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The mechanical origin of the radial shape in distichous phyllotaxy grass plants JOURNAL ARTICLE published 1 July 2021 in in silico Plants |
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Phenomics data processing: extracting dose–response curve parameters from high-resolution temperature courses and repeated field-based wheat height measurements JOURNAL ARTICLE published 1 January 2022 in in silico Plants Research funded by Innosuisse (KTI P-Nr 27059.2 PFLS-LS) | Deutsche Forschungsgemeinschaft (PI 377/24-1) |
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Investigations into the emergent properties of gene-to-phenotype networks across cycles of selection: a case study of shoot branching in plants JOURNAL ARTICLE published 1 January 2022 in in silico Plants Research funded by Australian Research Council Centre of Excellence for Plant Success in Nature and Agriculture (CE200100015) | Australian Grains Research and Development Corporation (UOQ1903-008RTX) | Australian Research Council Georgina Sweet Laureate Fellowship (FL180100139) | Australian Research Council Discovery Early Career Researcher Award (DE210101407) |
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Identifying transcription factor–DNA interactions using machine learning JOURNAL ARTICLE published 1 July 2022 in in silico Plants Research funded by National Science Foundation (IOS-1856627,IOS-2026554,IOS-1916804) |
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The Arabidopsis Framework Model version 2 predicts the organism-level effects of circadian clock gene mis-regulation JOURNAL ARTICLE published 1 July 2022 in in silico Plants Research funded by European Commission (245143) | BBSRC FLIP (BB/M017605) | BBSRC Institute Strategic Programme (BB/J004561/1) | Swiss National Science Foundation (31003A_162555) | Marie Skłodowska-Curie (GA-2010-267243) |
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Modelling the architecture of hazelnut (Corylus avellana) Tonda di Giffoni over two successive years JOURNAL ARTICLE published 9 May 2024 in in silico Plants |
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Limiting transpiration rate in high evaporative demand conditions to improve Australian wheat productivity JOURNAL ARTICLE published 1 January 2021 in in silico Plants Research funded by Grains Research and Development Corporation (CSP00179) |
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Corrigendum to: Researcher Profile: Przemysław Prusinkiewicz JOURNAL ARTICLE published 1 January 2021 in in silico Plants |
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Evaluation of brace root parameters and its effect on the stiffness of maize JOURNAL ARTICLE published 1 January 2022 in in silico Plants |
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Reuse of process-based models: automatic transformation into many programming languages and simulation platforms JOURNAL ARTICLE published 1 January 2020 in in silico Plants Research funded by French National Research Agency (ANR-16-CONV-0004) | H2020 IPM Decision (#817617) | European Union Horizon 2020 Research and Innovation program (#810775) |