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Expressions of resistome is linked to the key functions and stability of active rumen microbiome

JOURNAL ARTICLE published December 2022 in Animal Microbiome

Research funded by Central Public-interest Scientific Institution Basal Research Fund (Y2022QC10) | Ministry of Agriculture, Forestry and Fisheries (2015P008R,2018F095R) | Genome Alberta ('Omics') | Agricultural Science and Technology Innovation Program (CAAS-ASTIP-2017-FRI-04)

Authors: Tao Ma | Rahat Zaheer | Tim A. McAllister | Wei Guo | Fuyong Li | Yan Tu | Qiyu Diao | Le Luo Guan

Ecological and microbiological diversity of chigger mites, including vectors of scrub typhus, on small mammals across stratified habitats in Thailand

JOURNAL ARTICLE published December 2019 in Animal Microbiome

Research funded by Agence Nationale de la Recherche (ANR-07-BDIV-012,ANR-11-CPEL-002,ANR-17-CE35-0003)

Authors: Kittipong Chaisiri | A. Christina Gill | Alexandr A. Stekolnikov | Soawapak Hinjoy | John W. McGarry | Alistair C. Darby | Serge Morand | Benjamin L. Makepeace

Investigating the impact of database choice on the accuracy of metagenomic read classification for the rumen microbiome

JOURNAL ARTICLE published 18 November 2022 in Animal Microbiome

Research funded by EASTBIO (BB/M010996/1) | Biotechnology and Biological Sciences Research Council (BB/S006680/1,BB/S006680/1) | UK Research and Innovation (BBS/E/D/30002276,BBS/E/D/30002276)

Authors: Rebecca H. Smith | Laura Glendinning | Alan W. Walker | Mick Watson

Microbial environment shapes immune function and cloacal microbiota dynamics in zebra finches Taeniopygia guttata

JOURNAL ARTICLE published December 2020 in Animal Microbiome

Research funded by NWO (Vidi 864.10.012)

Authors: H. Pieter J. van Veelen | Joana Falcão Salles | Kevin D. Matson | Marco van der Velde | B. Irene Tieleman

The skin microbiome of Xenopus laevis and the effects of husbandry conditions

JOURNAL ARTICLE published 5 February 2021 in Animal Microbiome

Research funded by Wellcome Trust (212942/Z/18/Z) | Biotechnology and Biological Sciences Research Council (BB/R014841/1) | Research England (E3,E3)

Authors: Maya Z. Piccinni | Joy E. M. Watts | Marie Fourny | Matt Guille | Samuel C. Robson

Signatures of functional bacteriome structure in a tropical direct-developing amphibian species

JOURNAL ARTICLE published 7 June 2022 in Animal Microbiome

Research funded by National Science Foundation (IOS-1947681)

Authors: Renato A. Martins | Sasha E. Greenspan | Daniel Medina | Shannon Buttimer | Vanessa M. Marshall | Wesley J. Neely | Samantha Siomko | Mariana L. Lyra | Célio F. B. Haddad | Vinícius São-Pedro | C. Guilherme Becker

Low microbiome diversity in threatened amphibians from two biodiversity hotspots

JOURNAL ARTICLE published 29 December 2022 in Animal Microbiome

Authors: Sasha E. Greenspan | Pedro Peloso | Jesualdo A. Fuentes-González | Molly Bletz | Mariana L. Lyra | Ibere F. Machado | Renato A. Martins | Daniel Medina | Diego Moura-Campos | Wesley J. Neely | Jackson Preuss | Marcelo J. Sturaro | Renata I. Vaz | Carlos A. Navas | Luís Felipe Toledo | Alexandro M. Tozetti | Miguel Vences | Douglas C. Woodhams | Célio F. B. Haddad | Jason Pienaar | C. Guilherme Becker

Dynamic effects of black soldier fly larvae meal on the cecal bacterial microbiota and prevalence of selected antimicrobial resistant determinants in broiler chickens

JOURNAL ARTICLE published 15 February 2024 in Animal Microbiome

Research funded by Ontario Agri-Food Innovation Alliance (27320) | Canada First Research Excellence Fund (499129)

Authors: Calvin Ho-Fung Lau | Sabrina Capitani | Yuan-Ching Tien | Lou Ann Verellen | Munene Kithama | Hellen Kang | Elijah G. Kiarie | Edward Topp | Moussa S. Diarra | Michael Fruci

Temporal dynamics of the fecal microbiome in female pigs from early life through estrus, parturition, and weaning of the first litter of piglets

JOURNAL ARTICLE published 21 February 2024 in Animal Microbiome

Authors: Tara N. Gaire | H. Morgan Scott | Noelle R. Noyes | Aaron C. Ericsson | Michael D. Tokach | Hayden William | Mariana B. Menegat | Javier Vinasco | T. G. Nagaraja | Victoriya V. Volkova

Bacterial communities in carnivorous pitcher plants colonize and persist in inquiline mosquitoes

JOURNAL ARTICLE published December 2022 in Animal Microbiome

Research funded by National Science Foundation (2019368) | U.S. Department of Agriculture (2018-67012-29991) | National Institutes of Health (NIGMS-5-T32 GM135066) | Howard Hughes Medical Institute (GT14993)

Authors: Aldo A. Arellano | Kerri L. Coon

Gut microbiota and age shape susceptibility to clostridial enteritis in lorikeets under human care

JOURNAL ARTICLE published 9 January 2022 in Animal Microbiome

Research funded by National Cancer Institute (P30 CA016058)

Authors: David Minich | Christopher Madden | Mauricio A. Navarro | Leo Glowacki | Kristen French-Kim | Willow Chan | Morgan V. Evans | Kilmer Soares | Ryan Mrofchak | Rushil Madan | Gregory A. Ballash | Krista LaPerle | Subhadeep Paul | Yael Vodovotz | Francisco A. Uzal | Margaret Martinez | Jennifer Hausmann | Randall E. Junge | Vanessa L. Hale

The microbiome of captive hamadryas baboons

JOURNAL ARTICLE published December 2020 in Animal Microbiome

Research funded by Danmarks Frie Forskningsfond (11106571)

Authors: Xuanji Li | Urvish Trivedi | Asker Daniel Brejnrod | Gisle Vestergaard | Martin Steen Mortensen | Mads Frost Bertelsen | Søren Johannes Sørensen

Effects of rearing mode on gastro-intestinal microbiota and development, immunocompetence, sanitary status and growth performance of lambs from birth to two months of age

JOURNAL ARTICLE published 17 July 2023 in Animal Microbiome

Research funded by Lallemand SAS (NA,NA,NA,NA)

Authors: Lysiane Dunière | Philippe Ruiz | Yacine Lebbaoui | Laurie Guillot | Mickael Bernard | Evelyne Forano | Frédérique Chaucheyras-Durand

Influence of bacteria on the maintenance of a yeast during Drosophila melanogaster metamorphosis

JOURNAL ARTICLE published December 2021 in Animal Microbiome

Research funded by agence nationale de la recherche (ANR-16-CE02-0015) | agropolis fondation (ID 1505-002)

Authors: Robin Guilhot | Antoine Rombaut | Anne Xuéreb | Kate Howell | Simon Fellous

Microbial community structure and composition is associated with host species and sex in Sigmodon cotton rats

JOURNAL ARTICLE published December 2021 in Animal Microbiome

Research funded by National Institute of Allergy and Infectious Diseases (1R21AI149262,1R21AI154016,1R21AI142321,R21AI142321-01A1S1,U19AI095227,1R01HL146401)

Authors: Britton A. Strickland | Mira C. Patel | Meghan H. Shilts | Helen H. Boone | Arash Kamali | Wei Zhang | Daniel Stylos | Marina S. Boukhvalova | Christian Rosas-Salazar | Shibu Yooseph | Seesandra V. Rajagopala | Jorge C. G. Blanco | Suman R. Das

Characterization of the gut microbiome in wild rocky mountainsnails (Oreohelix strigosa)

JOURNAL ARTICLE published December 2021 in Animal Microbiome

Authors: Bridget Chalifour | Jingchun Li

Dietary Bacillus spp. supplementation to both sow and progenies improved post-weaning growth rate, gut function, and reduce the pro-inflammatory cytokine production in weaners challenged with Escherichia coli K88

JOURNAL ARTICLE published 24 January 2024 in Animal Microbiome

Authors: Vetriselvi Sampath | Sungbo Cho | Jinuk Jeong | Seyoung Mun | Choon Han Lee | Rafael Gustavo Hermes | Apichaya Taechavasonyoo | Natasja Smeets | Susanne Kirwan | Kyudong Han | In Ho Kim

Geography and elevation as drivers of cloacal microbiome assemblages of a passerine bird distributed across Sulawesi, Indonesia

JOURNAL ARTICLE published 16 January 2023 in Animal Microbiome

Research funded by National Science Foundation (DEB 1457845,DEB 1457654/2039257,DEB 1457845)

Authors: Rachael L. Joakim | Mohammad Irham | Tri Haryoko | Karen M. C. Rowe | Yohanna Dalimunthe | Syahfitri Anita | Anang S. Achmadi | Jimmy A. McGuire | Susan Perkins | Rauri C. K. Bowie

Trophic level and proteobacteria abundance drive antibiotic resistance levels in fish from coastal New England

JOURNAL ARTICLE published 6 March 2023 in Animal Microbiome

Research funded by National Science Foundation (1644760,OIA-1655221) | National Institutes of Health (R01DK125382,R01DK125382)

Authors: Benjamin J. Korry | Peter Belenky

Correction to: Microbiota populations in supragingival plaque, subgingival plaque, and saliva habitats of adult dogs

JOURNAL ARTICLE published December 2021 in Animal Microbiome

Authors: Patrícia M. Oba | Meredith Q. Carroll | Celeste Alexander | Helen Valentine | Amy J. Somrak | Stephanie C. J. Keating | Adrianna M. Sage | Kelly S. Swanson