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Anisotropic contrast optical microscope

Journal Article published Nov 2016 in Review of Scientific Instruments volume 87 issue 11 on page 113701

Research funded by Division of Materials Research (DMR 1420645) | Division of Chemical, Bioengineering, Environmental, and Transport Systems (CBET 1254415) | Division of Civil, Mechanical and Manufacturing Innovation (CMMI 1337856) | Division of Electrical, Communications and Cyber Systems (ECCS 1542182) | Division of Earth Sciences (EAR 1521428) | Division of Chemistry (CHE 1309806) | Office of Experimental Program to Stimulate Competitive Research (EPS-1004094)

Authors: D. Peev, T. Hofmann, N. Kananizadeh, S. Beeram, E. Rodriguez, S. Wimer, K. B. Rodenhausen, C. M. Herzinger, T. Kasputis, E. Pfaunmiller, A. Nguyen, R. Korlacki, A. Pannier, Y. Li, E. Schubert, D. Hage, M. Schubert

Discovery of Nicotinamide Adenine Dinucleotide Binding Proteins in the Escherichia coli Proteome Using a Combined Energetic- and Structural-Bioinformatics-Based Approach

Journal Article published 5 Dec 2016 in Journal of Proteome Research volume 16 issue 2 on pages 470 to 480

Research funded by Division of Mathematical Sciences (DMS-1614777) | Division of Integrative Organismal Systems (IOS-1127027) | Division of Chemistry (CHE-1506752) | Division of Biological Infrastructure (DBI-1262189) | National Institute of General Medical Sciences (5 R01 GM088317, R01 GM097528) | Division of Information and Intelligent Systems (IIS-1319551)

Authors: Lingfei Zeng, Woong-Hee Shin, Xiaolei Zhu, Sung Hoon Park, Chiwook Park, W. Andy Tao, Daisuke Kihara

Efficient Time-Dependent Monte Carlo Simulations of Stimulated Raman Scattering in a Turbid Medium

Journal Article published 5 Dec 2014 in ACS Photonics volume 1 issue 12 on pages 1322 to 1329

Research funded by Division of Biological Infrastructure (DBI-1250361) | Welch Foundation (A-1261) | Division of Engineering Education and Centers (EEC-0540832) | Division of Electrical, Communications and Cyber Systems (ECCS- 1250360) | Division of Chemical, Bioengineering, Environmental, and Transport Systems (CBET-1250363) | Division of Physics (PHY-1068554, PHY-1241032)

Authors: Brett H. Hokr, Vladislav V. Yakovlev, Marlan O. Scully

Nucleosome positioning and composition modulate in silico chromatin flexibility

Journal Article published 7 Jan 2015 in Journal of Physics: Condensed Matter volume 27 issue 6 on page 064112

Research funded by U.S. Public Health Service (GM-34809) | Division of Computing and Communication Foundations (1263082) | National Science Foundation (MCB-1050470) | Division of Mathematical Sciences (1228203) | Division of Industrial Innovation and Partnerships (0758566) | Office of Cyberinfrastructure (1310283) | International Business Machines Corporation (OCR award)

Authors: N Clauvelin, P Lo, O I Kulaeva, E V Nizovtseva, J Diaz-Montes, J Zola, M Parashar, V M Studitsky, W K Olson

A Bayesian Framework for Intent Detection and Stimulation Selection in SSVEP BCIs

Journal Article published Jun 2015 in IEEE Signal Processing Letters volume 22 issue 6 on pages 743 to 747

Research funded by Division of Information and Intelligent Systems (1118061, 1149570) | Division of Behavioral and Cognitive Sciences (1027724) | National Institutes of Health (5R01DC009834) | SBE Office of Multidisciplinary Activities (0835976) | Division of Computer and Network Systems (1136027)

Authors: Matt Higger, Murat Akcakaya, Hooman Nezamfar, Gerald LaMountain, Umut Orhan, Deniz Erdogmus

Load-Dependent Cascading Failures in Finite-Size Erdös-Rényi Random Networks

Journal Article published 1 Apr 2017 in IEEE Transactions on Network Science and Engineering volume 4 issue 2 on pages 129 to 139

Research funded by U.S. Department of Defense (HDTRA1-13-1-0029) | National Natural Science Foundation of China (61328102) | National Science Foundation | Division of Mathematical Sciences (1622433) | Division of Astronomical Sciences (1547436) | Division of Electrical, Communications and Cyber Systems (1508051, 1305979) | Division of Computer and Network Systems (1343155, 1265227)

Authors: Dan Lv, Ali Eslami, Shuguang Cui

Protein structure model refinement in CASP12 using short and long molecular dynamics simulations in implicit solvent

Journal Article published 1 Sep 2017 in Proteins: Structure, Function, and Bioinformatics

Research funded by Division of Biological Infrastructure (DBI1262189) | National Institute of General Medical Sciences (R01GM123055) | Division of Information and Intelligent Systems (IIS1319551) | Division of Integrative Organismal Systems (IOS1127027) | Division of Mathematical Sciences (DMS1614777) | National Institutes of Health (R01GM123055) | National Science Foundation (IIS1319551, DBI1262189, IOS1127027, DMS1614777)

Authors: Genki Terashi, Daisuke Kihara

Improved performance in CAPRI round 37 using LZerD docking and template-based modeling with combined scoring functions

Journal Article published 11 Sep 2017 in Proteins: Structure, Function, and Bioinformatics

Research funded by Division of Integrative Organismal Systems (IOS1127027) | National Institute of General Medical Sciences (R01GM097528) | National Institutes of Health (R01GM123055, R01GM097528) | National Science Foundation (IIS1319551, DBI1262189, IOS1127027, DMS1614777) | Division of Mathematical Sciences (DMS1614777) | Division of Biological Infrastructure (DBI1262189) | Division of Information and Intelligent Systems (IIS1319551)

Authors: Lenna X. Peterson, Woong-Hee Shin, Hyungrae Kim, Daisuke Kihara

Developmental and Subcellular Organization of Single-Cell C4 Photosynthesis in Bienertia sinuspersici Determined by Large-Scale Proteomics and cDNA Assembly from 454 DNA Sequencing

Journal Article published 9 Apr 2015 in Journal of Proteome Research volume 14 issue 5 on pages 2090 to 2108

Research funded by National Science Foundation (IBN 0641232) | Office of International Science and Engineering | Division of Molecular and Cellular Biosciences (MCB 1146928) | Division of Biological Infrastructure (DBI 0605016) | Division of Integrative Organismal Systems (IOS-1127017) | Deutsche Forschungsgemeinschaft (OF106/1)

Authors: Sascha Offermann, Giulia Friso, Kelly A. Doroshenk, Qi Sun, Richard M. Sharpe, Thomas W. Okita, Diana Wimmer, Gerald E. Edwards, Klaas J. van Wijk

Seasonal changes in the altitudinal distribution of nocturnally migrating birds during autumn migration

Journal Article published Dec 2015 in Royal Society Open Science volume 2 issue 12 on page 150347

Research funded by Division of Information and Intelligent Systems (IIS-1017793, IIS-1125098) | Division of Computer and Network Systems (CNS-1059284) | Office of Cyberinfrastructure (OCI-1053575) | Division of Environmental Biology (DEB-110008)

Authors: Frank A. La Sorte, Wesley M. Hochachka, Andrew Farnsworth, Daniel Sheldon, Benjamin M. Van Doren, Daniel Fink, Steve Kelling