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Anisotropic contrast optical microscope

Journal Article published Nov 2016 in Review of Scientific Instruments volume 87 issue 11 on page 113701

Research funded by Division of Materials Research (DMR 1420645) | Division of Chemical, Bioengineering, Environmental, and Transport Systems (CBET 1254415) | Division of Civil, Mechanical and Manufacturing Innovation (CMMI 1337856) | Division of Electrical, Communications and Cyber Systems (ECCS 1542182) | Division of Earth Sciences (EAR 1521428) | Division of Chemistry (CHE 1309806) | Office of Experimental Program to Stimulate Competitive Research (EPS-1004094)

Authors: D. Peev, T. Hofmann, N. Kananizadeh, S. Beeram, E. Rodriguez, S. Wimer, K. B. Rodenhausen, C. M. Herzinger, T. Kasputis, E. Pfaunmiller, A. Nguyen, R. Korlacki, A. Pannier, Y. Li, E. Schubert, D. Hage, M. Schubert

Quantifying the qualitative with epistemic network analysis: A human factors case study of task-allocation communication in a primary care team

Journal Article published 2 Jan 2018 in IISE Transactions on Healthcare Systems Engineering volume 8 issue 1 on pages 72 to 82

Research funded by Division of Engineering Education and Centers (EEC-1232656, EEC-1340402) | Division of Research on Learning in Formal and Informal Settings (DRL-0918409, DRL-0946372, DRL-1247262, DRL-1418288) | Division of Research, Evaluation, and Communication (REC-0347000) | Division of Undergraduate Education (DUE-0919347, DUE-1225885) | National Center for Advancing Translational Sciences (UL1TR000427)

Authors: Abigail R. Wooldridge, Pascale Carayon, David Williamson Shaffer, Brendan Eagan

Coarse-Grained Force Field for Imidazolium-Based Ionic Liquids

Journal Article published 11 May 2018 in Journal of Chemical Theory and Computation volume 14 issue 6 on pages 3252 to 3261

Research funded by Division of Computing and Communication Foundations (CCF-1420882) | Division of Engineering Education and Centers (EEC-1720701) | Division of Electrical, Communications and Cyber Systems (ECCS-1506619) | Division of Materials Research (DMR-1708852, DMR-1720633) | Office of International Science and Engineering (1545907)

Authors: Alireza Moradzadeh, Mohammad H. Motevaselian, Sikandar Y. Mashayak, Narayana R. Aluru

Discovery of Nicotinamide Adenine Dinucleotide Binding Proteins in the Escherichia coli Proteome Using a Combined Energetic- and Structural-Bioinformatics-Based Approach

Journal Article published 5 Dec 2016 in Journal of Proteome Research volume 16 issue 2 on pages 470 to 480

Research funded by Division of Mathematical Sciences (DMS-1614777) | Division of Integrative Organismal Systems (IOS-1127027) | Division of Chemistry (CHE-1506752) | Division of Biological Infrastructure (DBI-1262189) | National Institute of General Medical Sciences (5 R01 GM088317, R01 GM097528) | Division of Information and Intelligent Systems (IIS-1319551)

Authors: Lingfei Zeng, Woong-Hee Shin, Xiaolei Zhu, Sung Hoon Park, Chiwook Park, W. Andy Tao, Daisuke Kihara

Cognitive control and language ability contribute to online reading comprehension: Implications for older adult bilinguals

Journal Article published 14 Mar 2018 in International Journal of Bilingualism on page 136700691876314

Research funded by Eunice Kennedy Shriver National Institute of Child Health and Human Development (HD082796) | SBE Office of Multidisciplinary Activities (1409973, 657782) | Division of Behavioral and Cognitive Sciences (1349110, 1535124) | Office of International Science and Engineering (1968369) | Division of Undergraduate Education (1561660)

Authors: Megan Zirnstein, Janet G van Hell, Judith F Kroll

Efficient Time-Dependent Monte Carlo Simulations of Stimulated Raman Scattering in a Turbid Medium

Journal Article published 5 Dec 2014 in ACS Photonics volume 1 issue 12 on pages 1322 to 1329

Research funded by Division of Biological Infrastructure (DBI-1250361) | Welch Foundation (A-1261) | Division of Engineering Education and Centers (EEC-0540832) | Division of Electrical, Communications and Cyber Systems (ECCS- 1250360) | Division of Chemical, Bioengineering, Environmental, and Transport Systems (CBET-1250363) | Division of Physics (PHY-1068554, PHY-1241032)

Authors: Brett H. Hokr, Vladislav V. Yakovlev, Marlan O. Scully

Nucleosome positioning and composition modulate in silico chromatin flexibility

Journal Article published 7 Jan 2015 in Journal of Physics: Condensed Matter volume 27 issue 6 on page 064112

Research funded by U.S. Public Health Service (GM-34809) | Division of Computing and Communication Foundations (1263082) | National Science Foundation (MCB-1050470) | Division of Mathematical Sciences (1228203) | Division of Industrial Innovation and Partnerships (0758566) | Office of Cyberinfrastructure (1310283) | International Business Machines Corporation (OCR award)

Authors: N Clauvelin, P Lo, O I Kulaeva, E V Nizovtseva, J Diaz-Montes, J Zola, M Parashar, V M Studitsky, W K Olson

Pleistocene animal communities of a 1.5 million-year-old lake margin grassland and their relationship to Homo erectus paleoecology

Journal Article published Sep 2018 in Journal of Human Evolution volume 122 on pages 70 to 83

Research funded by National Science Foundation | Division of Behavioral and Cognitive Sciences (1515054, 1128170, 0924476, 1232522) | Division of Graduate Education (0801634) | Division of Earth Sciences (77-23149) | SBE Office of Multidisciplinary Activities (1409612) | Wenner-Gren Foundation | Leakey Foundation | George Washington University Selective Excellence Initiative

Authors: Neil T. Roach, Andrew Du, Kevin G. Hatala, Kelly R. Ostrofsky, Jonathan S. Reeves, David R. Braun, John W.K. Harris, Anna K. Behrensmeyer, Brian G. Richmond

A Bayesian Framework for Intent Detection and Stimulation Selection in SSVEP BCIs

Journal Article published Jun 2015 in IEEE Signal Processing Letters volume 22 issue 6 on pages 743 to 747

Research funded by Division of Information and Intelligent Systems (1118061, 1149570) | Division of Behavioral and Cognitive Sciences (1027724) | National Institutes of Health (5R01DC009834) | SBE Office of Multidisciplinary Activities (0835976) | Division of Computer and Network Systems (1136027)

Authors: Matt Higger, Murat Akcakaya, Hooman Nezamfar, Gerald LaMountain, Umut Orhan, Deniz Erdogmus

Load-Dependent Cascading Failures in Finite-Size Erdös-Rényi Random Networks

Journal Article published 1 Apr 2017 in IEEE Transactions on Network Science and Engineering volume 4 issue 2 on pages 129 to 139

Research funded by U.S. Department of Defense (HDTRA1-13-1-0029) | National Natural Science Foundation of China (61328102) | National Science Foundation | Division of Mathematical Sciences (1622433) | Division of Astronomical Sciences (1547436) | Division of Electrical, Communications and Cyber Systems (1508051, 1305979) | Division of Computer and Network Systems (1343155, 1265227)

Authors: Dan Lv, Ali Eslami, Shuguang Cui

Developmental and Subcellular Organization of Single-Cell C4 Photosynthesis in Bienertia sinuspersici Determined by Large-Scale Proteomics and cDNA Assembly from 454 DNA Sequencing

Journal Article published 9 Apr 2015 in Journal of Proteome Research volume 14 issue 5 on pages 2090 to 2108

Research funded by National Science Foundation (IBN 0641232) | Office of International Science and Engineering | Division of Molecular and Cellular Biosciences (MCB 1146928) | Division of Biological Infrastructure (DBI 0605016) | Division of Integrative Organismal Systems (IOS-1127017) | Deutsche Forschungsgemeinschaft (OF106/1)

Authors: Sascha Offermann, Giulia Friso, Kelly A. Doroshenk, Qi Sun, Richard M. Sharpe, Thomas W. Okita, Diana Wimmer, Gerald E. Edwards, Klaas J. van Wijk

Improved performance in CAPRI round 37 using LZerD docking and template-based modeling with combined scoring functions

Journal Article published 11 Sep 2017 in Proteins: Structure, Function, and Bioinformatics volume 86 on pages 311 to 320

Research funded by Division of Integrative Organismal Systems (IOS1127027) | National Institute of General Medical Sciences (R01GM097528) | National Institutes of Health (R01GM123055, R01GM097528) | National Science Foundation (IIS1319551, DBI1262189, IOS1127027, DMS1614777) | Division of Mathematical Sciences (DMS1614777) | Division of Biological Infrastructure (DBI1262189) | Division of Information and Intelligent Systems (IIS1319551)

Authors: Lenna X. Peterson, Woong-Hee Shin, Hyungrae Kim, Daisuke Kihara

Protein structure model refinement in CASP12 using short and long molecular dynamics simulations in implicit solvent

Journal Article published 1 Sep 2017 in Proteins: Structure, Function, and Bioinformatics volume 86 on pages 189 to 201

Research funded by Division of Biological Infrastructure (DBI1262189) | National Institute of General Medical Sciences (R01GM123055) | Division of Information and Intelligent Systems (IIS1319551) | Division of Integrative Organismal Systems (IOS1127027) | Division of Mathematical Sciences (DMS1614777) | National Institutes of Health (R01GM123055) | National Science Foundation (IIS1319551, DBI1262189, IOS1127027, DMS1614777)

Authors: Genki Terashi, Daisuke Kihara

Seasonal changes in the altitudinal distribution of nocturnally migrating birds during autumn migration

Journal Article published Dec 2015 in Royal Society Open Science volume 2 issue 12 on page 150347

Research funded by Division of Information and Intelligent Systems (IIS-1017793, IIS-1125098) | Division of Computer and Network Systems (CNS-1059284) | Office of Cyberinfrastructure (OCI-1053575) | Division of Environmental Biology (DEB-110008)

Authors: Frank A. La Sorte, Wesley M. Hochachka, Andrew Farnsworth, Daniel Sheldon, Benjamin M. Van Doren, Daniel Fink, Steve Kelling

Tau Assembly: The Dominant Role of PHF6 (VQIVYK) in Microtubule Binding Region Repeat R3

Journal Article published 24 Mar 2015 in The Journal of Physical Chemistry B volume 119 issue 13 on pages 4582 to 4593

Research funded by David and Lucile Packard Foundation | NIH Office of the Director (1RO1AG047116-01) | Division of Materials Research (DMR-1121053) | Division of Computer and Network Systems (CNS-0960316) | Division of Molecular and Cellular Biosciences (MCB-1158577) | Division of Atmospheric and Geospace Sciences (1RO1AG047116-01) | Division of Chemistry (CHE-1301032) | University of California, Santa Barbara

Authors: Pritam Ganguly, Thanh D. Do, Luca Larini, Nichole E. LaPointe, Alexander J. Sercel, Madeleine F. Shade, Stuart C. Feinstein, Michael T. Bowers, Joan-Emma Shea

Holding steady: Little change in intensity or timing of bird migration over the Gulf of Mexico

Journal Article published 8 Jan 2019 in Global Change Biology

Research funded by Division of Biological Infrastructure (DBI-1356308, DBI-1661259, DBI-1661329) | Leon Levy Foundation | The Wolf Creek Charitable Foundation | Division of Emerging Frontiers (EF-1340921) | Division of Environmental Biology (DEB-110008) | Division of Information and Intelligent Systems (IIS-1125098) | National Fish and Wildlife Foundation | Edward Rose Postdoctoral Fellowship

Authors: Kyle G. Horton, Benjamin M. Van Doren, Frank A. La Sorte, Emily B. Cohen, Hannah L. Clipp, Jeffrey J. Buler, Daniel Fink, Jeffrey F. Kelly, Andrew Farnsworth

Chaoborus spp. Transport CH4 from the Sediments to the Surface Waters of a Eutrophic Reservoir, But Their Contribution to Water Column CH4 Concentrations and Diffusive Efflux Is Minor

Journal Article published 12 Jan 2018 in Environmental Science & Technology volume 52 issue 3 on pages 1165 to 1173

Research funded by Directorate for Geosciences (ICER-1517823) | Institute for Critical Technologies and Applied Science, Virginia Tech | Division of Emerging Frontiers (EF-1702506) | Division of Computer and Network Systems (CNS-1737424) | Division of Environmental Biology (DEB-1601061) | Western Virginia Water Authority | Fralin Life Sciences Institute, Virginia Tech | Global Change Center, Virginia Tech

Authors: Cayelan C. Carey, Ryan P. McClure, Jonathan P. Doubek, Mary E. Lofton, Nicole K. Ward, Durelle T. Scott

Urban rat races: spatial population genomics of brown rats ( Rattus norvegicus ) compared across multiple cities

Journal Article published 6 Jun 2018 in Proceedings of the Royal Society B: Biological Sciences volume 285 issue 1880 on page 20180245

Research funded by Wellcome Trust (102330/Z/13/Z) | Natural Sciences and Engineering Research Council of Canada (2015-05058) | Canadian Institutes of Health Research (CGV-104833, MOP-119530) | Division of Biological Infrastructure (1531639) | Office of Integrative Activities (1738789) | Division of Environmental Biology (1457523) | Division of Behavioral and Cognitive Sciences (1313703) | National Institutes of Health (R01-TW009504)

Authors: Matthew Combs, Kaylee A. Byers, Bruno M. Ghersi, Michael J. Blum, Adalgisa Caccone, Federico Costa, Chelsea G. Himsworth, Jonathan L. Richardson, Jason Munshi-South

Data Driven Automatic Modulation Classification via Dictionary Learning

Journal Article published Aug 2018 in IEEE Wireless Communications Letters volume 7 issue 4 on pages 586 to 589

Research funded by National Natural Science Foundation of China (61631003, 61525101, 61629101) | Division of Mathematical Sciences (DMS-1622433) | Division of Astronomical Sciences (AST-1547436) | Division of Electrical, Communications and Cyber Systems (ECCS-1659025) | Division of Computer and Network Systems (CNS-1343155) | Defense Threat Reduction Agency (HDTRA1-13-1-0029) | Shenzhen Fundamental Research Fund (KQTD2015033114415450)

Authors: Kezhong Zhang, Easton Li Xu, Han Zhang, Zhiyong Feng, Shuguang Cui

Modeling disordered protein interactions from biophysical principles

Journal Article published 10 Apr 2017 in PLOS Computational Biology volume 13 issue 4 on page e1005485

Research funded by National Institute of General Medical Sciences (R01GM097528) | Division of Information and Intelligent Systems (IIS1319551) | Division of Biological Infrastructure (DBI1262189) | Division of Mathematical Sciences (DMS1614777) | Office of Integrative Activities (IOS1127027)

Authors: Lenna X. Peterson, Amitava Roy, Charles Christoffer, Genki Terashi, Daisuke Kihara

Editors: Marco Punta