ExactFDR: exact computation of false discovery rate estimate in case-control association studies

JOURNAL ARTICLE published 15 October 2008 in Bioinformatics

Authors: Jérôme Wojcik | Karl Forner

Systems biologyMetabolic systems cost-benefit analysis for interpreting network structure and regulation

JOURNAL ARTICLE published 15 August 2007 in Bioinformatics

Authors: Ross Carlson

Identification of regulatory modules by co-clustering latent variable models: stem cell differentiation

JOURNAL ARTICLE published 15 August 2006 in Bioinformatics

Authors: Je-Gun Joung | Dongho Shin | Rho Hyun Seong | Byoung-Tak Zhang

GetBonNie for building, analyzing and sharing rule-based models

JOURNAL ARTICLE published 1 June 2009 in Bioinformatics

Authors: Bin Hu | G. Matthew Fricke | James R. Faeder | Richard G. Posner | William S. Hlavacek

GTRAC: fast retrieval from compressed collections of genomic variants

JOURNAL ARTICLE published 1 September 2016 in Bioinformatics

Research funded by NIH (1 U01 CA198943-01)

Authors: Kedar Tatwawadi | Mikel Hernaez | Idoia Ochoa | Tsachy Weissman

ALeS: adaptive-length spaced-seed design

JOURNAL ARTICLE published 9 June 2021 in Bioinformatics

Research funded by NSER (R3143A01) | Research Tools and Instruments (R3143A07)

Authors: Arnab Mallik | Lucian Ilie

Editors: Valencia Alfonso

EPS: automated feature selection in case–control studies using extreme pseudo-sampling

JOURNAL ARTICLE published 11 October 2021 in Bioinformatics

Authors: Ruhollah Shemirani | Stephane Wenric | Eimear Kenny | José Luis Ambite

Editors: Pier Luigi Martelli

CHIT: an allele-specific method for testing the association between molecular quantitative traits and phenotype–genotype interaction

JOURNAL ARTICLE published 11 December 2021 in Bioinformatics

Research funded by National Institutes of Health (HL138098,HL079966,HL117191,MD011764,HL150431,HL150431)

Authors: Qi Yan | Erick Forno | Juan C Celedón | Wei Chen | Daniel E Weeks

Editors: Russell Schwartz

PAX2GRAPHML: a python library for large-scale regulation network analysis using BioPAX

JOURNAL ARTICLE published 11 December 2021 in Bioinformatics

Authors: François Moreews | Hugo Simon | Anne Siegel | Florence Gondret | Emmanuelle Becker

Editors: Lenore Cowen

On the stability of log-rank test under labeling errors

JOURNAL ARTICLE published 18 November 2021 in Bioinformatics

Authors: Ben Galili | Anat Samohi | Zohar Yakhini

MNHN-Tree-Tools: a toolbox for tree inference using multi-scale clustering of a set of sequences

JOURNAL ARTICLE published 5 November 2021 in Bioinformatics

Authors: Thomas Haschka | Loic Ponger | Christophe Escudé | Julien Mozziconacci

Editors: Teresa Przytycka

SAGE2: parallel human genome assembly

JOURNAL ARTICLE published 15 February 2018 in Bioinformatics

Authors: Michael Molnar | Ehsan Haghshenas | Lucian Ilie

Editors: Inanc Birol

GEInter: an R package for robust gene–environment interaction analysis

JOURNAL ARTICLE published 25 October 2021 in Bioinformatics

Research funded by National Institutes of Health (CA204120) | National Natural Science Foundation of China (12071273)

Authors: Mengyun Wu | Xing Qin | Shuangge Ma

Editors: Jonathan Wren

2020 Outstanding contributions to ISCB award: Judith Blake

JOURNAL ARTICLE published 5 November 2021 in Bioinformatics

Authors: Christiana N Fogg | Diane E Kovats | Ron Shamir

PaIntDB: network-based omics integration and visualization using protein–protein interactions in Pseudomonas aeruginosa

JOURNAL ARTICLE published 18 November 2021 in Bioinformatics

Research funded by Canadian Institutes for Health Research (FDN-154287)

Authors: Javier J Castillo-Arnemann | Olga Solodova | Bhavjinder K Dhillon | Robert E W Hancock

Editors: Alfonso Valencia

tSFM 1.0: tRNA Structure–Function Mapper

JOURNAL ARTICLE published 25 October 2021 in Bioinformatics

Research funded by National Science Foundation (INSPIRE-1344279) | National Institute of Allergy and Infectious Diseases (1R21AI127582-0) | National Science Foundation (ACI-1429783) | U.S. Department of Energy (DE-AC05-00OR22725)

Authors: Travis J Lawrence | Fatemeh Hadi-Nezhad | Ivo Grosse | David H Ardell

Editors: Jan Gorodkin

ACES: Analysis of Conservation with an Extensive list of Species

JOURNAL ARTICLE published 5 November 2021 in Bioinformatics

Research funded by National Institute of Mental Health (R00MH117165) | National Institute of General Medical Sciences (T32GM007067)

Authors: Evin M Padhi | Jeffrey K Ng | Elvisa Mehinovic | Eleanor I Sams | Tychele N Turner

Editors: Tobias Marschall

RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface

JOURNAL ARTICLE published 1 March 2013 in Bioinformatics

Authors: Markus S. Schröder | Daniel Gusenleitner | John Quackenbush | Aedín C. Culhane | Benjamin Haibe-Kains

Tandem repeat interval pattern identifies animal taxa

JOURNAL ARTICLE published 25 August 2021 in Bioinformatics

Authors: Balaram Bhattacharyya | Uddalak Mitra | Ramkishore Bhattacharyya

Editors: Janet Kelso

ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins

JOURNAL ARTICLE published 1 April 2011 in Bioinformatics

Authors: Kamil Tamiola | Frans A. A. Mulder