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Predicting zeta potential of liposomes from their structure: A nano-QSPR model for DOPE, DC-Chol, DOTAP, and EPC formulations

JOURNAL ARTICLE published December 2024 in Computational and Structural Biotechnology Journal

Research funded by Narodowe Centrum Nauki (2021/40/Q/ST5/00117)

Authors: Kamila Jarzynska | Agnieszka Gajewicz-Skretna | Krzesimir Ciura | Tomasz Puzyn

Internal Transcribed Spacer 1 (ITS1) based sequence typing reveals phylogenetically distinct Ascaris population

JOURNAL ARTICLE published 2015 in Computational and Structural Biotechnology Journal

Authors: Koushik Das | Punam Chowdhury | Sandipan Ganguly

Computational evolution of an RNA-binding protein towards enhanced oxidized-RNA binding

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Juan C. Gonzalez-Rivera | Asuka A. Orr | Sean M. Engels | Joseph M. Jakubowski | Mark W. Sherman | Katherine N. O'Connor | Tomas Matteson | Brendan C. Woodcock | Lydia M. Contreras | Phanourios Tamamis

LibGENiE – A bioinformatic pipeline for the design of information-enriched enzyme libraries

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (180544)

Authors: David Patsch | Michael Eichenberger | Moritz Voss | Uwe T. Bornscheuer | Rebecca M. Buller

Early Vascular Ageing and Cellular Senescence in Chronic Kidney Disease

JOURNAL ARTICLE published 2019 in Computational and Structural Biotechnology Journal

Research funded by Karolinska Institutet (2009-1068) | European Union‘s Horizon 2020 research and innovation Program (722609)

Authors: Lu Dai | Abdul Rashid Qureshi | Anna Witasp | Bengt Lindholm | Peter Stenvinkel

Comparative evaluation of AlphaFold2 and disorder predictors for prediction of intrinsic disorder, disorder content and fully disordered proteins

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by National Science Foundation (DBI2146027,IIS2125218)

Authors: Bi Zhao | Sina Ghadermarzi | Lukasz Kurgan

TWN-RENCOD: A novel method for protein binding site comparison

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by Ministry of Science, ICT and Future Planning (NRF2020R1A2C100691511)

Authors: Kwang-Eun Choi | Anand Balupuri | Nam Sook Kang

Structural and functional properties of Antarctic fish cytoglobins-1: Cold-reactivity in multi-ligand reactions

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Daniela Giordano | Alessandra Pesce | Stijn Vermeylen | Stefania Abbruzzetti | Marco Nardini | Francesco Marchesani | Herald Berghmans | Constantí Seira | Stefano Bruno | F. Javier Luque | Guido di Prisco | Paolo Ascenzi | Sylvia Dewilde | Martino Bolognesi | Cristiano Viappiani | Cinzia Verde

Ordering Protein Contact Matrices

JOURNAL ARTICLE published 2018 in Computational and Structural Biotechnology Journal

Research funded by European Union (FP7-IDEAS-ERC 294809)

Authors: Chuan Xu | Guillaume Bouvier | Benjamin Bardiaux | Michael Nilges | Thérèse Malliavin | Abdel Lisser

SigTree : A Microbial Community Analysis Tool to Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree

JOURNAL ARTICLE published 2017 in Computational and Structural Biotechnology Journal

Authors: John R. Stevens | Todd R. Jones | Michael Lefevre | Balasubramanian Ganesan | Bart C. Weimer

A conserved Neurite Outgrowth and Guidance motif with biomimetic potential in neuronal Cell Adhesion Molecules

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Research funded by Università degli Studi di Padova (PRAT2015 CPDA151948)

Authors: Giorgia Scapin | Matteo Gasparotto | Daniele Peterle | Simone Tescari | Elena Porcellato | Alberto Piovesan | Irene Righetto | Laura Acquasaliente | Vincenzo De Filippis | Francesco Filippini

Clinical Decision Support systems: A step forward in establishing the clinical laboratory as a decision maker hub - A CDS system protocol implementation in the clinical laboratory

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Emilio Flores | José María Salinas | Álvaro Blasco | Maite López-Garrigós | Ruth Torreblanca | Rosa Carbonell | Laura Martínez-Racaj | Maria Salinas

A rice protein interaction network reveals high centrality nodes and candidate pathogen effector targets

JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal

Research funded by National Science Foundation (IOS-1557796,IOS-2038872)

Authors: Bharat Mishra | Nilesh Kumar | M. Shahid Mukhtar

Databases and prospects of dynamic gene regulation in eukaryotes: A mini review

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Chi-Nga Chow | Chien-Wen Yang | Wen-Chi Chang

THE INNOVATIVE MEDICINES INITIATIVE: A PUBLIC PRIVATE PARTNERSHIP MODEL TO FOSTER DRUG DISCOVERY

JOURNAL ARTICLE published March 2013 in Computational and Structural Biotechnology Journal

Authors: Elisabetta Vaudano

Optimized Enzymatic Synthesis of Feruloyl Derivatives Catalyzed by Three Novel Feruloyl Esterases from Talaromyces wortmannii in Detergentless Microemulsions

JOURNAL ARTICLE published 2018 in Computational and Structural Biotechnology Journal

Research funded by European Commission (613868)

Authors: Io Antonopoulou | Laura Iancu | Peter Jütten | Alexander Piechot | Ulrika Rova | Paul Christakopoulos

Extended transcriptome analysis reveals genome-wide lncRNA-mediated epigenetic dysregulation in colorectal cancer

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Research funded by Guangzhou Science, Technology and Innovation Commission (201607010067)

Authors: Sha He | Juanzhi Chen | Huan Gao | Guixian Yang | Feixiang Zhang | Yanqing Ding | Hao Zhu

Transcriptomics in the tropics: Total RNA-based profiling of Costa Rican bromeliad-associated communities

JOURNAL ARTICLE published 2015 in Computational and Structural Biotechnology Journal

Research funded by NSF (OISE-0526551)

Authors: Shana K. Goffredi | Gene E. Jang | Mohamed F. Haroon

BILE ACID BINDING PROTEIN: A VERSATILE HOST OF SMALL HYDROPHOBIC LIGANDS FOR APPLICATIONS IN THE FIELDS OF MRI CONTRAST AGENTS AND BIO-NANOMATERIALS

JOURNAL ARTICLE published March 2013 in Computational and Structural Biotechnology Journal

Authors: Katiuscia Pagano | Simona Tomaselli | Serena Zanzoni | Michael Assfalg | Henriette Molinari | Laura Ragona

The search of sequence variants using a constrained protein evolution simulation approach

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Pierre Tufféry | Sjoerd de Vries