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Beyond the snapshot: identification of the timeless, enduring indicator microbiome informing soil fertility and crop production in alkaline soils JOURNAL ARTICLE published December 2022 in Environmental Microbiome Research funded by National Natural Science Foundation of China (41771294) | national key research and development program (2019YFC1520700) | Youth Innovation Promotion Association of the Chinese Academy of Sciences (2014271) |
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Vegetation as a key driver of the distribution of microbial generalists that in turn shapes the overall microbial community structure in the low Arctic tundra JOURNAL ARTICLE published 10 May 2023 in Environmental Microbiome Research funded by Ministry of Environment (NIE-A-2022-10) | Ministry of Education, Culture, Sports, Science and Technology (JPMXD1300000000) | Japan Society for the Promotion of Science (JP18H03413) |
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Deciphering core phyllomicrobiome assemblage on rice genotypes grown in contrasting agroclimatic zones: implications for phyllomicrobiome engineering against blast disease JOURNAL ARTICLE published December 2022 in Environmental Microbiome Research funded by Council of Scientific and Industrial Research, India (File No: 09/083(0367)/2016-EMR-I) |
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Microplastic exposure across trophic levels: effects on the host–microbiota of freshwater organisms JOURNAL ARTICLE published 6 July 2022 in Environmental Microbiome Research funded by Vetenskapsrådet (DO 2011-0014) |
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Prokaryotes of renowned Karlovy Vary (Carlsbad) thermal springs: phylogenetic and cultivation analysis JOURNAL ARTICLE published 11 September 2022 in Environmental Microbiome Research funded by Grantová Agentura České Republiky (18-00036S) | Ministerstvo Školství, Mládeže a Tělovýchovy (LM2018131) | European structural and investment funds (CZ.02.2.69/0.0/0.0/18_053/ 0016974) |
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Metadata harmonization–Standards are the key for a better usage of omics data for integrative microbiome analysis JOURNAL ARTICLE published December 2022 in Environmental Microbiome Research funded by Horizon 2020 Framework Programme (818116,818116,818116) |
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Unravelling the effects of tropical land use conversion on the soil microbiome JOURNAL ARTICLE published December 2020 in Environmental Microbiome Research funded by Deutsche Forschungsgemeinschaft (CRC 990,CRC 990) |
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Microbiome response in an urban river system is dominated by seasonality over wastewater treatment upgrades JOURNAL ARTICLE published 19 February 2023 in Environmental Microbiome |
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Competition-cooperation in the chemoautotrophic ecosystem of Movile Cave: first metagenomic approach on sediments JOURNAL ARTICLE published 17 August 2022 in Environmental Microbiome |
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Out of the blue: the independent activity of sulfur-oxidizers and diatoms mediate the sudden color shift of a tropical river JOURNAL ARTICLE published 19 January 2023 in Environmental Microbiome Research funded by European Research Council Advanced Grant (ERC250350,ERC250350,ERC250350) | Universidad de Costa Rica (Pry01-1747-2022,VI 809-B6-524) | European Union’s Horizon 2020 (892961) |
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The gut microbiome mediates adaptation to scarce food in Coleoptera JOURNAL ARTICLE published 13 November 2023 in Environmental Microbiome Research funded by Unitatea Executiva pentru Finantarea Invatamantului Superior, a Cercetarii, Dezvoltarii si Inovarii (PCCF16/2018,PCCF16/2018,PCCF16/2018,PCCF16/2018,PCCF16/2018,PCCF16/2018,PCCF16/2018,PCCF16/2018) | U.S. Department of Energy, Office of Science, Biological and Environmental Research (NA,NA) | National Institutes of Health (R01DE024463,R01DE024463) | Grantová Agentura České Republiky (20-23718Y) |
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Phyllosphere bacterial and fungal communities vary with host species identity, plant traits and seasonality in a subtropical forest JOURNAL ARTICLE published 9 June 2022 in Environmental Microbiome Research funded by Key Special Project for Introduced Talents Team of Southern Marine Science and Engineering Guangdong Laboratory (GML2019ZD0408,GML2019ZD0408) | National Natural Science Foundation of China (31370446) |
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Sterile sentinels and MinION sequencing capture active soil microbial communities that differentiate crop rotations JOURNAL ARTICLE published 7 May 2024 in Environmental Microbiome |
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Composition and variability of core phyllosphere fungal mycobiota on field-grown broccoli JOURNAL ARTICLE published 1 March 2023 in Environmental Microbiome Research funded by Ministry of Science and ICT, Republic of Korea (2019R1C1C1009664) | Ministry of Science and ICT, South Korea (2020R1A5A8017671,2021R1F1A1064222) | Ministry of Education (2018R1D1A3B07050366) |
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Structure and specialization of mycorrhizal networks in phylogenetically diverse tropical communities JOURNAL ARTICLE published December 2022 in Environmental Microbiome Research funded by Fondation ARS Cuttoli-Paul Appell (00103178) | European Research Council (CoG-PANDA) | Agence Nationale de la Recherche (ANR-19-CE02-0002) |
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Improved quantitative microbiome profiling for environmental antibiotic resistance surveillance JOURNAL ARTICLE published 18 November 2021 in Environmental Microbiome Research funded by engineering and physical sciences research council (EP/K503885/1) | newton fund (331945729) |
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The microbiome of cereal plants: The current state of knowledge and the potential for future applications JOURNAL ARTICLE published 31 March 2023 in Environmental Microbiome Research funded by Austrian Science Fund (I 5085) |
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Bacterial diversity and predicted enzymatic function in a multipurpose surface water system – from wastewater effluent discharges to drinking water production JOURNAL ARTICLE published December 2021 in Environmental Microbiome Research funded by Academy of Finland (263451) | KAUTE-Säätiö (20190366) |
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Belowground microbiota analysis indicates that Fusarium spp. exacerbate grapevine trunk disease JOURNAL ARTICLE published 3 April 2023 in Environmental Microbiome Research funded by China Agriculture Research System of MOF and MARA (CARS-29) | Outstanding Scientist Grant of the Beijing Academy of Agriculture and Forestry Sciences (JKZX202204) |
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Exploiting a targeted resistome sequencing approach in assessing antimicrobial resistance in retail foods JOURNAL ARTICLE published 29 March 2023 in Environmental Microbiome Research funded by Government of Canada Genomic Research and Development Initiatives (GRDI-AMR,GRDI-AMR,GRDI-AMR) | Canadian Food Inspection Agency,Canada (N-000166) |