TRANSFAC Retrieval Program: A Network Model Database of Eukaryotic Transcription Regulating Sequences and Proteins

JOURNAL ARTICLE published January 1994 in Journal of Computational Biology

Authors: R. KNÜPPEL | P. DIETZE | W. LEHNBERG | K. FRECH | E. WINGENDER

A Simple Iterative Approach to Parameter Optimization

JOURNAL ARTICLE published August 2000 in Journal of Computational Biology

Authors: Alexander Zien | Ralf Zimmer | Thomas Lengauer

JOURNAL ISSUE published July 2007 in Journal of Computational Biology

Bi-Billboard: Symmetrization and Careful Choice of Informant Species Results in Higher Accuracy of Regulatory Element Prediction

JOURNAL ARTICLE published June 2011 in Journal of Computational Biology

Authors: Norbert Dojer | Przemyslaw Biecek | Jerzy Tiuryn

BCL::Contact–Low Confidence Fold Recognition Hits Boost Protein Contact Prediction and De Novo Structure Determination

JOURNAL ARTICLE published February 2010 in Journal of Computational Biology

Authors: Mert Karakaş | Nils Woetzel | Jens Meiler

Binding Balls: Fast Detection of Binding Sites Using a Property of Spherical Fourier Transform

JOURNAL ARTICLE published November 2009 in Journal of Computational Biology

Authors: Matteo Comin | Concettina Guerra | Frank Dellaert

A Structural EM Algorithm for Phylogenetic Inference

JOURNAL ARTICLE published April 2002 in Journal of Computational Biology

Authors: Nir Friedman | Matan Ninio | Itsik Pe'er | Tal Pupko

Principal Component Analysis of Binding Energies for Single-Point Mutants of hT2R16 Bound to an Agonist Correlate with Experimental Mutant Cell Response

JOURNAL ARTICLE published January 2015 in Journal of Computational Biology

Authors: Derek E. Chen | Darryl L. Willick | Joseph B. Ruckel | Wely B. Floriano

Chaining Sequence/Structure Seeds for Computing RNA Similarity

JOURNAL ARTICLE published March 2015 in Journal of Computational Biology

Authors: Laetitia Bourgeade | Cédric Chauve | Julien Allali

Validation of a Mathematical Model of Gene Transcription in Aggregated Cellular Systems: Application to L1 Retrotransposition

JOURNAL ARTICLE published April 2007 in Journal of Computational Biology

Authors: Grzegorz A. Rempala | Kenneth S. Ramos | Ted Kalbfleisch | Ivo Teneng

Bayesian Sequential Inference for Stochastic Kinetic Biochemical Network Models

JOURNAL ARTICLE published April 2006 in Journal of Computational Biology

Authors: Andrew Golightly | Darren J. Wilkinson

Reconstructing Boolean Models of Signaling

JOURNAL ARTICLE published March 2013 in Journal of Computational Biology

Authors: Roded Sharan | Richard M. Karp

Approximation Algorithms for a Genetic Diagnostics Problem

JOURNAL ARTICLE published January 1998 in Journal of Computational Biology

Authors: S. RAO KOSARAJU | ALEJANDRO A. SCHÄFFER | LESLIE G. BIESECKER

Handling Long Targets and Errors in Sequencing by Hybridization

JOURNAL ARTICLE published June 2003 in Journal of Computational Biology

Authors: Eran Halperin | Shay Halperin | Tzvika Hartman | Ron Shamir

Statistical Analysis of Global Connectivity and Activity Distributions in Cellular Networks

JOURNAL ARTICLE published July 2010 in Journal of Computational Biology

Authors: Adrián López García De Lomana | Qasim K. Beg | G. De Fabritiis | Jordi Villà-Freixa

Characterizing the Empirical Distribution of Prokaryotic Genome n-mers in the Presence of Nullomers

JOURNAL ARTICLE published October 2014 in Journal of Computational Biology

Authors: Loni Philip Tabb | Wei Zhao | Jingyu Huang | Gail L. Rosen

NP-MuScL: Unsupervised Global Prediction of Interaction Networks from Multiple Data Sources

JOURNAL ARTICLE published November 2013 in Journal of Computational Biology

Authors: Kriti Puniyani | Eric P. Xing

Locating Large-Scale Gene Duplication Events through Reconciled Trees: Implications for Identifying Ancient Polyploidy Events in Plants

JOURNAL ARTICLE published August 2009 in Journal of Computational Biology

Authors: J.G. Burleigh | M.S. Bansal | A. Wehe | O. Eulenstein

The Integration of Genetic Maps Using Bayesian Inference

JOURNAL ARTICLE published June 2010 in Journal of Computational Biology

Authors: Howsun Jow | Madhuchhanda Bhattacharjee | Richard Boys | Darren Wilkinson

Haplotype Reconstruction in Large Pedigrees with Untyped Individuals through IBD Inference

JOURNAL ARTICLE published November 2011 in Journal of Computational Biology

Authors: Xin Li | Jing Li