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Computational Methods for Mapping, Assembly and Quantification for Coding and Non-coding Transcripts

JOURNAL ARTICLE published 2019 in Computational and Structural Biotechnology Journal

Research funded by National Natural Science Foundation of China (31850410463,31850410486) | Shenzhen Science and Technology Innovation Committee (JCYJ20170307110638890)

Authors: Isaac A. Babarinde | Yuhao Li | Andrew P. Hutchins

A pathway-based mutation signature to predict the clinical outcomes and response to CTLA-4 inhibitors in melanoma

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by National Natural Science Foundation of China (62072145) | Natural Science Foundation of Heilongjiang Province (LH2019C042)

Authors: Qian Wang | Xiangmei Li | Jiayue Qiu | Yalan He | Jiashuo Wu | Ji Li | Wei Liu | Junwei Han

A guide to multi-omics data collection and integration for translational medicine

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Efi Athieniti | George M. Spyrou

Soil under stress: The importance of soil life and how it is influenced by (micro)plastic pollution

JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal

Research funded by Interreg Europe (38-2-25-18) | Fonds Wetenschappelijk Onderzoek (12S9418N)

Authors: L. Joos | C. De Tender

THE ALBUMIN-BINDING DOMAIN AS A SCAFFOLD FOR PROTEIN ENGINEERING

JOURNAL ARTICLE published March 2013 in Computational and Structural Biotechnology Journal

Authors: Johan Nilvebrant | Sophia Hober

A Review of Matched-pairs Feature Selection Methods for Gene Expression Data Analysis

JOURNAL ARTICLE published 2018 in Computational and Structural Biotechnology Journal

Research funded by National Natural Science Foundation of China (61472159,61572227) | International Cooperation and Exchanges NSFC (81320108025) | Development Project of Jilin Province of China (20160204022GX,2017C033,20180414012GH) | National Science Foundation/EPSCoR (IIA-1355423) | National Science Foundation (ACI-1548562)

Authors: Sen Liang | Anjun Ma | Sen Yang | Yan Wang | Qin Ma

HDAC2 as a target for developing anti-cancer drugs

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by Ministry of Health and Welfare (HI20C0344)

Authors: Hyein Jo | Kyeonghee Shim | Han-Ul Kim | Hyun Suk Jung | Dooil Jeoung

A novel P38α MAPK activator Bruceine A exhibits potent anti-pancreatic cancer activity

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Cai Lu | Lu Fan | Peng-Fei Zhang | Wei-Wei Tao | Cheng-Bin Yang | Er-Xin Shang | Fei-Yan Chen | Chun-Tao Che | Hai-Bo Cheng | Jin-Ao Duan | Ming Zhao

Impact of crosslink heterogeneity on extracellular matrix mechanics and remodeling

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Michael Mak

Predicting the impacts of mutations on protein-ligand binding affinity based on molecular dynamics simulations and machine learning methods

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Research funded by Hong Kong Research Grants Council (11200818) | City University of Hong Kong (9610034,9610460) | Shenzhen Fundamental Research Program (JCYJ20170817095210760) | National Natural Science Foundation of China (61602309) | Guangdong Basic and Applied Basic Research Foundation (2019A1515011384) | Interdisciplinary Research Scheme of the Dean’s Research Fund (FLASS/DRF/IDS-3) | Departmental Collaborative Research Fund (MIT/DCRF-R2/18-19)

Authors: Debby D. Wang | Le Ou-Yang | Haoran Xie | Mengxu Zhu | Hong Yan

Advances in multi-omics study of biomarkers of glycolipid metabolism disorder

JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal

Authors: Xinyi Fang | Runyu Miao | Jiahua Wei | Haoran Wu | Jiaxing Tian

From sequence to function through structure: Deep learning for protein design

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Noelia Ferruz | Michael Heinzinger | Mehmet Akdel | Alexander Goncearenco | Luca Naef | Christian Dallago

Predicting zeta potential of liposomes from their structure: A nano-QSPR model for DOPE, DC-Chol, DOTAP, and EPC formulations

JOURNAL ARTICLE published December 2024 in Computational and Structural Biotechnology Journal

Research funded by Narodowe Centrum Nauki (2021/40/Q/ST5/00117)

Authors: Kamila Jarzynska | Agnieszka Gajewicz-Skretna | Krzesimir Ciura | Tomasz Puzyn

UPIMAPI, reCOGnizer and KEGGCharter: Bioinformatics tools for functional annotation and visualization of (meta)-omics datasets

JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal

Authors: João C. Sequeira | Miguel Rocha | M. Madalena Alves | Andreia F. Salvador

A review on automatic analysis techniques for color fundus photographs

JOURNAL ARTICLE published 2016 in Computational and Structural Biotechnology Journal

Authors: Renátó Besenczi | János Tóth | András Hajdu

Multi-omics landscape and clinical significance of a SMAD4-driven immune signature: Implications for risk stratification and frontline therapies in pancreatic cancer

JOURNAL ARTICLE published 2022 in Computational and Structural Biotechnology Journal

Research funded by National Natural Science Foundation of China (81870457,82172944)

Authors: Libo Wang | Zaoqu Liu | Rongtao Zhu | Ruopeng Liang | Weijie Wang | Jian Li | Yuyuan Zhang | Chunguang Guo | Xinwei Han | Yuling Sun

Predicting host dependency factors of pathogens in Drosophila melanogaster using machine learning

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Research funded by Deutsche Forschungsgemeinschaft (KO 3678/5-1) | Bundesministerium für Bildung und Forschung (01EO1502)

Authors: Olufemi Aromolaran | Thomas Beder | Eunice Adedeji | Yvonne Ajamma | Jelili Oyelade | Ezekiel Adebiyi | Rainer Koenig

p-Nitrophenyl esters provide new insights and applications for the thiolase enzyme OleA

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Megan D. Smith | Lambros J. Tassoulas | Troy A. Biernath | Jack E. Richman | Kelly G. Aukema | Lawrence P. Wackett

Amino acid residue at the 165th position tunes EYFP chromophore maturation. A structure-based design

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Nadya V. Pletneva | Eugene G. Maksimov | Elena A. Protasova | Anastasia V. Mamontova | Tatiana R. Simonyan | Rustam H. Ziganshin | Konstantin A. Lukyanov | Liya Muslinkina | Sergei Pletnev | Alexey M. Bogdanov | Vladimir Z. Pletnev

Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in Mycobacterium leprae

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Authors: Sundeep Chaitanya Vedithi | Carlos H.M. Rodrigues | Stephanie Portelli | Marcin J. Skwark | Madhusmita Das | David B. Ascher | Tom L. Blundell | Sony Malhotra